(Q30168356)

9 June 2017

Clusters in alpha/beta barrel proteins: implications for protein structure, function, and folding: a graph theoretical approach (English)

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9 June 2017

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Kannan N

1

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9 June 2017

Selvaraj S

series ordinal

2

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9 June 2017

Gromiha MM

series ordinal

3

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9 June 2017

Vishveshwara S

series ordinal

4

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9 June 2017

language of work or name

English

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publication date

1 May 2001

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9 June 2017

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9 June 2017

43

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9 June 2017

2

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9 June 2017

103-112

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The evolution of alpha/beta barrel enzymes

9 June 2017

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Directed evolution of new catalytic activity using the alpha/beta-barrel scaffold

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Structural principles of alpha/beta barrel proteins: the packing of the interior of the sheet

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Principles determining the structure of beta-sheet barrels in proteins. II. The observed structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Conserved structural features on protein surfaces: small exterior hydrophobic clusters

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

A graph-theoretic approach to the identification of three-dimensional patterns of amino acid side-chains in protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Structural resemblance between the families of bacterial signal-transduction proteins and of G proteins revealed by graph theoretical techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Use of techniques derived from graph theory to compare secondary structure motifs in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Analysis of protein sheet topologies by graph theoretical methods.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

A graph-theoretic algorithm for comparative modeling of protein structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Identification of side-chain clusters in protein structures by a graph spectral method.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Backbone cluster identification in proteins by a graph theoretical method.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Stabilization centers in proteins: identification, characterization and predictions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Divergent evolution of a beta/alpha-barrel subclass: detection of numerous phosphate-binding sites by motif search

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Amino acid properties and side-chain orientation in proteins: A cross correlation approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Recurrent alpha beta loop structures in TIM barrel motifs show a distinct pattern of conserved structural features.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Evaluation of the sequence template method for protein structure prediction. Discrimination of the (beta/alpha)8-barrel fold.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Nucleation mechanisms in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Specific nucleus as the transition state for protein folding: evidence from the lattice model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Obligatory steps in protein folding and the conformational diversity of the transition state

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Automatic recognition of hydrophobic clusters and their correlation with protein folding units

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Supersites within superfolds. Binding site similarity in the absence of homology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Emergence of Preferred Structures in a Simple Model of Protein Folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

VMD: visual molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

Conserved residues and the mechanism of protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010501%2943%3A2%3C103%3A%3AAID-PROT1022%3E3.0.CO%3B2-X

10.1002/1097-0134(20010501)43:2<103::AID-PROT1022>3.0.CO;2-X

21 January 2018

Identifiers

DOI

1 reference

9 June 2017

1 reference