(Q30194891)

10 June 2017

1 reference

title

De novo and inverse folding predictions of protein structure and dynamics (English)

1 reference

protein structure prediction

10 June 2017

main subject

0 references

0 references

1

1 reference

10 June 2017

Kolinski A

2

1 reference

10 June 2017

Skolnick J

series ordinal

3

1 reference

10 June 2017

publication date

1 August 1993

1 reference

Journal of Computer - Aided Molecular Design

10 June 2017

published in

1 reference

10 June 2017

volume

7

1 reference

10 June 2017

issue

4

1 reference

10 June 2017

page(s)

397-438

1 reference

Protein engineering. The design, synthesis and characterization of factitious proteins

10 June 2017

cites work

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FBF02337559

Computer simulations of globular protein folding and tertiary structure.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FBF02337559

Theory of cooperative transitions in protein molecules. I. Why denaturation of globular protein is a first-order phase transition

21 January 2018

1 reference

12 December 2020

Determinants of a protein fold. Unique features of the globin amino acid sequences

1 reference

12 December 2020

Dynamic Monte Carlo simulations of a new lattice model of globular protein folding, structure and dynamics

1 reference

12 December 2020

A method for predicting protein structure from sequence.

1 reference

12 December 2020

Conservation of residue interactions in a family of Ca-binding proteins

1 reference

12 December 2020

Respective roles of short- and long-range interactions in protein folding

1 reference

12 December 2020

Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

1 reference

12 December 2020

Evolution of proteins formed by beta-sheets. II. The core of the immunoglobulin domains

1 reference

12 December 2020

A fast and sensitive multiple sequence alignment algorithm.

1 reference

12 December 2020

Simulations of the folding of a globular protein

1 reference

12 December 2020

Monte Carlo simulation of equilibrium globular protein folding: alpha-helical bundles with long loops

1 reference

12 December 2020

Profile analysis: detection of distantly related proteins

1 reference

12 December 2020

Molecular dynamics simulations in biology

1 reference

12 December 2020

Topology fingerprint approach to the inverse protein folding problem

1 reference

12 December 2020

Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming

1 reference

12 December 2020

A survey of amino acid side-chain interactions in 21 proteins

1 reference

12 December 2020

Dynamic Monte Carlo simulations of globular protein folding/unfolding pathways. I. Six-member, Greek key beta-barrel proteins

1 reference

12 December 2020

Pattern recognition in several sequences: consensus and alignment.

1 reference

12 December 2020

Contact potential that recognizes the correct folding of globular proteins

1 reference

12 December 2020

Secondary structure-based profiles: use of structure-conserving scoring tables in searching protein sequence databases for structural similarities

1 reference

12 December 2020

The building of protein structures from alpha-carbon coordinates

1 reference

12 December 2020

Protein structure. Prediction of progress at last

1 reference

12 December 2020

A lattice model for protein structure prediction at low resolution

1 reference

12 December 2020

An 8-fold beta alpha barrel protein with redundant folding possibilities

1 reference

12 December 2020

An empirical energy function for threading protein sequence through the folding motif

1 reference

12 December 2020

Residue contacts in protein structures and implications for protein folding.

1 reference

12 December 2020

Structure of oxidized poplar plastocyanin at 1.6 A resolution

1 reference

12 December 2020

The frequency of ion-pair substructures in proteins is quantitatively related to electrostatic potential: a statistical model for nonbonded interactions

1 reference

12 December 2020

Structure of azurin from Alcaligenes denitrificans refinement at 1.8 A resolution and comparison of the two crystallographically independent molecules

1 reference

12 December 2020

Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors.

1 reference

12 December 2020

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

12 December 2020

A Three-Dimensional Model of the Myoglobin Molecule Obtained by X-Ray Analysis

1 reference

12 December 2020

Comparison of the structures of globins and phycocyanins: evidence for evolutionary relationship

1 reference

12 December 2020

Cumulative site-directed charge-change replacements in bacteriophage T4 lysozyme suggest that long-range electrostatic interactions contribute little to protein stability

1 reference

12 December 2020

Analysis of sequence-similar pentapeptides in unrelated protein tertiary structures. Strategies for protein folding and a guide for site-directed mutagenesis

1 reference

12 December 2020

Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a data base of known protein conformations

1 reference

12 December 2020

Computer simulation of protein folding

1 reference

12 December 2020

Protein database searches for multiple alignments

1 reference

12 December 2020

Dynamic Monte Carlo study of the folding of a six-stranded Greek key globular protein

1 reference

12 December 2020

De novo design, expression, and characterization of Felix: a four-helix bundle protein of native-like sequence

1 reference

12 December 2020

A computer model to dynamically simulate protein folding: studies with crambin.

1 reference

12 December 2020

Evolution of proteins formed by beta-sheets. I. Plastocyanin and azurin

1 reference

12 December 2020

[Letter: Stereochemical theory of the secondary structure of globular proteins. II. Methods of localization of alpha-spiral and beta-structural regions]

1 reference

12 December 2020

Stability of polypeptide conformational states as determined by computer simulation of the free energy

1 reference

12 December 2020

Monte Carlo studies on equilibrium globular protein folding. III. The four helix bundle.

1 reference

12 December 2020

Identification of protein folds: matching hydrophobicity patterns of sequence sets with solvent accessibility patterns of known structures

1 reference

12 December 2020

Monte Carlo simulations of the folding of beta-barrel globular proteins

1 reference

12 December 2020

A data bank merging related protein structures and sequences

1 reference

12 December 2020

Rebuilding flavodoxin from C alpha coordinates: a test study

1 reference

12 December 2020

Cluster analysis of amino acid indices for prediction of protein structure and function

1 reference

12 December 2020

Noninteracting local‐structure model of folding and unfolding transition in globular proteins. II. Application to two‐dimensional lattice proteins

1 reference

12 December 2020

Protein folding bottlenecks: A lattice Monte Carlo simulation

1 reference

12 December 2020

The Protein Data Bank: a computer-based archival file for macromolecular structures

1 reference

12 December 2020

Prediction of Protein Structure and the Principles of Protein Conformation. Gerald D. Fasman, Ed. Plenum, New York, 1989. xiv, 798 pp., illus. $95.

1 reference

12 December 2020

Patterns of divergence in homologous proteins as indicators of secondary and tertiary structure: a prediction of the structure of the catalytic domain of protein kinases

1 reference

12 December 2020

Why do globular proteins fit the limited set of folding patterns?

1 reference

12 December 2020

A new approach to protein fold recognition

1 reference

12 December 2020

Novel method for the rapid evaluation of packing in protein structures

1 reference

12 December 2020

Sequence-structure matching in globular proteins: application to supersecondary and tertiary structure determination

1 reference

12 December 2020

Spontaneous insertion of polypeptide chains into membranes: a Monte Carlo model

1 reference

12 December 2020

Calculation of protein tertiary structure

1 reference

12 December 2020

Dynamic Monte Carlo simulations of globular protein folding. Model studies of in vivo assembly of four helix bundles and four member beta-barrels

1 reference

12 December 2020

Identification of protein sequence homology by consensus template alignment

1 reference

12 December 2020

Molten globule intermediates and protein folding

1 reference

12 December 2020

How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins

1 reference

12 December 2020

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

1 reference

12 December 2020

A simplified representation of protein conformations for rapid simulation of protein folding

1 reference

12 December 2020

A general method applicable to the search for similarities in the amino acid sequence of two proteins

1 reference

12 December 2020

An analysis of incorrectly folded protein models. Implications for structure predictions.

1 reference

12 December 2020

Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins

1 reference

12 December 2020

The molten globule state as a clue for understanding the folding and cooperativity of globular-protein structure.

1 reference

12 December 2020

Identification of predictive sequence motifs limited by protein structure data base size

1 reference

12 December 2020

Lattice model for globular protein three-dimensional structure

1 reference

12 December 2020

A flexible multiple sequence alignment program

1 reference

12 December 2020

Polymer principles in protein structure and stability.

1 reference

12 December 2020

Monte Carlo studies on equilibrium globular protein folding. I. Homopolymeric lattice models of beta-barrel proteins

1 reference

12 December 2020

Conformations of folded proteins in restricted spaces

1 reference

12 December 2020

SIRIUS. An automated method for the analysis of the preferred packing arrangements between protein groups

1 reference

12 December 2020

Computing tertiary structures of proteins

1 reference

12 December 2020

Folding of peptide fragments comprising the complete sequence of proteins. Models for initiation of protein folding. I. Myohemerythrin

1 reference

12 December 2020

A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons

1 reference

12 December 2020

On the formation of protein tertiary structure on a computer

1 reference

12 December 2020

Simulations of the folding pathway of triose phosphate isomerase-type alpha/beta barrel proteins

1 reference

12 December 2020

Evidence for a molten globule state as a general intermediate in protein folding

1 reference

12 December 2020

A search for the most stable folds of protein chains

1 reference

12 December 2020

Monte Carlo studies on equilibrium globular protein folding. II. Beta-barrel globular protein models

1 reference

12 December 2020

Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins

1 reference

12 December 2020

Metastability of the folded states of globular proteins

1 reference

12 December 2020

29 Computer-assisted rational drug design

1 reference

12 December 2020

A method for multiple sequence alignment with gaps.

1 reference

12 December 2020

Protein folding. Effect of packing density on chain conformation

1 reference

12 December 2020

Identifiers

DOI

10.1007/BF02337559

1 reference

journals/jcamd/GodzikKS93

10 June 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference