(Q30312628)

16 June 2017

Finding local structural similarities among families of unrelated protein structures: a generic non-linear alignment algorithm (English)

1 reference

16 June 2017

Lehtonen JV

1

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16 June 2017

Denessiouk K

series ordinal

2

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16 June 2017

May AC

series ordinal

3

1 reference

16 June 2017

Johnson MS

series ordinal

4

1 reference

16 June 2017

language of work or name

English

0 references

publication date

1 February 1999

1 reference

16 June 2017

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16 June 2017

34

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16 June 2017

3

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16 June 2017

341-355

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Protein structure comparisons using a combination of a genetic algorithm, dynamic programming and least-squares minimization

16 June 2017

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Improved genetic algorithm-based protein structure comparisons: pairwise and multiple superpositions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

D-alanine:D-alanine ligase: phosphonate and phosphinate intermediates with wild type and the Y216F mutant

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Gene duplications in the structural evolution of chymotrypsin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Protein structure alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Defining topologigical equivalences in macromolecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Detection of common three-dimensional substructures in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Three-dimensional, sequence order-independent structural comparison of a serine protease against the crystallographic database reveals active site similarities: potential implications to evolution and to protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Touring protein fold space with Dali/FSSP

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Pairwise iterative superposition of distantly related proteins and assessment of the significance of 3-D structural similarity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Use of techniques derived from graph theory to compare secondary structure motifs in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

A local alignment method for protein structure motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Identification of common molecular subsequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Common spatial arrangements of backbone fragments in homologous and non-homologous proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Analysis of topological and nontopological structural similarities in the PDB: new examples with old structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

A general method applicable to the search for similarities in the amino acid sequence of two proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Phylogenetic relationships from three-dimensional protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

The Protein Data Bank: a computer-based archival file for macromolecular structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Structure of the complex of Streptomyces griseus protease B and the third domain of the turkey ovomucoid inhibitor at 1.8-A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Structure of oxidized poplar plastocyanin at 1.6 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Enzyme-mononucleotide interactions: three different folds share common structural elements for ATP recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Three-dimensional solution structure of the pleckstrin homology domain from dynamin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Structure of the high affinity complex of inositol trisphosphate with a phospholipase C pleckstrin homology domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

CATH--a hierarchic classification of protein domain structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Crystal structure of the cell-binding B oligomer of verotoxin-1 from E. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Structure and X-ray amino acid sequence of a bacteriochlorophyll A protein from Prosthecochloris aestuarii refined at 1.9 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

The structure of OmpF porin in a tetragonal crystal form

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

The active site of aspartic proteinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Structure of prealbumin: secondary, tertiary and quaternary interactions determined by Fourier refinement at 1.8 A

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Structural evidence for gene duplication in the evolution of the acid proteases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

High-resolution X-ray structure of UDP-galactose 4-epimerase complexed with UDP-phenol

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Crystal structure of the HhaI DNA methyltransferase complexed with S-adenosyl-L-methionine

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Interactions of nucleotides with fully unadenylylated glutamine synthetase from Salmonella typhimurium

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

ATP binding proteins with different folds share a common ATP-binding structural motif

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

A method to search for similar protein local structures at ligand binding sites and its application to adenine recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Molecular anatomy: phyletic relationships derived from three-dimensional structures of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Refined crystal structure of gamma-chymotrypsin at 1.9 A resolution. Comparison with other pancreatic serine proteases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Accuracy and precision in protein structure analysis: restrained least-squares refinement of the structure of poplar plastocyanin at 1.33 Å resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

The effect of pH and temperature on the structure of the active site of azurin from Pseudomonas aeruginosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

Crystal structure of the unique parvalbumin component from muscle of the leopard shark (Triakis semifasciata). The first X-ray study of an alpha-parvalbumin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2819990215%2934%3A3%3C341%3A%3AAID-PROT7%3E3.0.CO%3B2-Z

10.1002/(SICI)1097-0134(19990215)34:3<341::AID-PROT7>3.0.CO;2-Z

21 January 2018

Identifiers

DOI

1 reference

16 June 2017

1 reference