(Q30328183)

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Ab initio protein structure prediction: progress and prospects.

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scholarly article

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Europe PubMed Central

PubMed publication ID

18 June 2017

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Europe PubMed Central

Ab initio protein structure prediction: progress and prospects. (English)

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Europe PubMed Central

PubMed publication ID

18 June 2017

protein structure prediction

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protein structure

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author name string

Bonneau R

1

1 reference

Europe PubMed Central

PubMed publication ID

18 June 2017

Baker D

2

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Europe PubMed Central

PubMed publication ID

18 June 2017

publication date

1 January 2001

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Europe PubMed Central

PubMed publication ID

18 June 2017

Annual Review of Biophysics and Biomolecular Structure

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Europe PubMed Central

PubMed publication ID

18 June 2017

30

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Europe PubMed Central

PubMed publication ID

18 June 2017

173-189

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Europe PubMed Central

PubMed publication ID

18 June 2017

Prediction of protein structure: the problem of fold multiplicity

1 reference

5 June 2022

https://opencitations.net/index/coci/api/v1/citations/10.1002/(SICI)1097-0134(1999)37:3+%3C199::AID-PROT25%3E3.3.CO;2-P

Search for the most stable folds of protein chains: II. Computation of stable architectures of beta-proteins using a self-consistent molecular field theory.

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

A short linear peptide that folds into a native stable beta-hairpin in aqueous solution

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Three-dimensional structures and contexts associated with recurrent amino acid sequence patterns

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

On the use of sequence homologies to predict protein structure: identical pentapeptides can have completely different conformations

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Unusually stable helix formation in short alanine-based peptides

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Principles that determine the structure of proteins

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https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

LINUS: a hierarchic procedure to predict the fold of a protein.

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

The complexity and accuracy of discrete state models of protein structure

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Exploring conformational space with a simple lattice model for protein structure

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Origins of structural diversity within sequentially identical hexapeptides

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

An evolutionary approach to folding small alpha-helical proteins that uses sequence information and an empirical guiding fitness function

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Prediction of protein secondary structure at better than 70% accuracy

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Energy functions that discriminate X-ray and near native folds from well-constructed decoys

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Additivity principles in biochemistry

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Dali/FSSP classification of three-dimensional protein folds

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Nativelike topology assembly of small proteins using predicted restraints in Monte Carlo folding simulations

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Coupling the folding of homologous proteins

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Protein folds and functions

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Prediction of local structure in proteins using a library of sequence-structure motifs

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Large-scale protein structure modeling of the Saccharomyces cerevisiae genome

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Functional analysis of the Escherichia coli genome using the sequence-to-structure-to-function paradigm: identification of proteins exhibiting the glutaredoxin/thioredoxin disulfide oxidoreductase activity.

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Three-dimensional structure analysis of PROSITE patterns

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Selecting near-native conformations in homology modeling: the role of molecular mechanics and solvation terms

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Predicting the structures of 18 peptides using Geocore

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Matching theory and experiment in protein folding

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Discrimination of the native from misfolded protein models with an energy function including implicit solvation

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Protein folding from 1961 to 1982.

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

A theoretical search for folding/unfolding nuclei in three-dimensional protein structures

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Protein secondary structure prediction based on position-specific scoring matrices

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

A simple model for calculating the kinetics of protein folding from three-dimensional structures

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

MIPS: a database for genomes and protein sequences

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

De novo protein structure determination using sparse NMR data.

1 reference

https://www.researchgate.net/publication/11997255_Ab_Initio_Protein_Structure_Prediction_Progress_and_Prospects#references

(PDF) Ab Initio Protein Structure Prediction: Progress and Prospects (English)

Identifiers

10.1146/ANNUREV.BIOPHYS.30.1.173

1 reference

Europe PubMed Central

PubMed publication ID

18 June 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

18 June 2017

ResearchGate publication ID

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