(Q30329170)

18 June 2017

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title

Predicting protein conformation by statistical methods. (English)

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18 June 2017

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I Simon

1

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18 June 2017

A Fiser

series ordinal

2

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18 June 2017

G E Tusnády

series ordinal

3

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18 June 2017

language of work or name

English

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publication date

1 October 2001

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Biochimica et Biophysica Acta

18 June 2017

published in

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18 June 2017

volume

1549

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18 June 2017

issue

2

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18 June 2017

page(s)

123-136

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The kinetics of formation of native ribonuclease during oxidation of the reduced polypeptide chain

18 June 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Chaperone substrates inside the cell

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

A simple method for displaying the hydropathic character of a protein

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

The detection and classification of membrane-spanning proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

How many membrane proteins are there?

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Physicochemical factors for discriminating between soluble and membrane proteins: hydrophobicity of helical segments and protein length

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

SOSUI: classification and secondary structure prediction system for membrane proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

The hydrophobic moment detects periodicity in protein hydrophobicity

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Are there dominant membrane protein families with a given number of helices?

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Protein structural classes in five complete genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

A model recognition approach to the prediction of all-helical membrane protein structure and topology

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Do transmembrane protein superfolds exist?

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

The influence of short-range interactions on protein conformation. I. Side chain-backbone interactions within a single peptide unit

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

A theory of protein molecule self-organization. IV. Helical and irregular local structures of unfolded protein chains

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Analysis of the code relating sequence to conformation in proteins: Possible implications for the mechanism of formation of helical regions

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

An algorithm for protein secondary structure prediction based on class prediction.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Protein secondary structure prediction in different structural classes

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Prediction of protein secondary structures from their hydrophobic characteristics.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Estimating the significance of sequence order in protein secondary structure and prediction.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

On the use of sequence homologies to predict protein structure: identical pentapeptides can have completely different conformations

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Is it better to combine predictions?

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Quantification of secondary structure prediction improvement using multiple alignments.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Chaos game representation of protein structures.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Decision tree-based formation of consensus protein secondary structure prediction.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Application of multiple sequence alignment profiles to improve protein secondary structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Cascaded multiple classifiers for secondary structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

A method for the prediction of surface "U"-turns and transglobular connections in small proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Improved method for prediction of protein backbone U-turn positions and major secondary structural elements between U-turns

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Prediction of the location and type of beta-turns in proteins using neural networks.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Comparison of solvent-inaccessible cores of homologous proteins: definitions useful for protein modelling

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Conservation and prediction of solvent accessibility in protein families

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Characterizing the microenvironment surrounding protein sites

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Calculation of protein conformation as an assembly of stable overlapping segments: application to bovine pancreatic trypsin inhibitor

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Different sequence environments of cysteines and half cystines in proteins. Application to predict disulfide forming residues

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Prediction of the disulfide-bonding state of cysteine in proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Role of evolutionary information in predicting the disulfide-bonding state of cysteine in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

On the cysteine and cystine content of proteins. Differences between intracellular and extracellular proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Disulphide bridges in globular proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Predicting the oxidation state of cysteines by multiple sequence alignment.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Different sequence environments of amino acid residues involved and not involved in long-range interactions in proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

The prediction of protein contacts from multiple sequence alignments

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

An analysis of simultaneous variation in protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Protein fold recognition and dynamics in the space of contact maps

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Recovery of protein structure from contact maps

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Efficient dynamics in the space of contact maps

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Stabilization centers in proteins: identification, characterization and predictions.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

A simple probabilistic scoring method for protein domain identification

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

A possible way for prediction of domain boundaries in globular proteins from amino acid sequence.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Domain size distributions can predict domain boundaries

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Membrane protein assembly: rules of the game

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

A critical evaluation of the hydropathy profile of membrane proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Cluster analysis of amino acid indices for prediction of protein structure and function

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Quantitative comparison of the ability of hydropathy scales to recognize surface beta-strands in proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Preference functions for prediction of membrane-buried helices in integral membrane proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Uncoupling hydrophobicity and helicity in transmembrane segments. Alpha-helical propensities of the amino acids in non-polar environments.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Combining hydrophobicity and helicity: a novel approach to membrane protein structure prediction.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

TMAP: a new email and WWW service for membrane-protein structural predictions.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Principles governing amino acid composition of integral membrane proteins: application to topology prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

A simple method for predicting transmembrane alpha helices with better accuracy.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Prediction of membrane proteins based on classification of transmembrane segments

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

New alignment strategy for transmembrane proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Transmembrane helices predicted at 95% accuracy

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Topology prediction for helical transmembrane proteins at 86% accuracy

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

A neural network model for the prediction of membrane-spanning amino acid sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

A tutorial on hidden Markov models and selected applications in speech recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Beta-barrel proteins from bacterial outer membranes: structure, function and refolding

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Identification of membrane spanning beta strands in bacterial porins.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Prediction by a neural network of outer membrane beta-strand protein topology

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Anionic phospholipids are determinants of membrane protein topology

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Predicting the topology of eukaryotic membrane proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

The PSIPRED protein structure prediction server

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Consensus predictions of membrane protein topology

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Helix packing in membrane proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Sequence specificity in the dimerization of transmembrane alpha-helices

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

A method for alpha-helical integral membrane protein fold prediction.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

kPROT: a knowledge-based scale for the propensity of residue orientation in transmembrane segments. Application to membrane protein structure prediction.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Elucidating the folding problem of alpha-helices: local motifs, long-range electrostatics, ionic-strength dependence and prediction of NMR parameters.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

GOR method for predicting protein secondary structure from amino acid sequence.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

JPred: a consensus secondary structure prediction server

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

MultiCoil: a program for predicting two- and three-stranded coiled coils

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

PHD: predicting one-dimensional protein structure by profile-based neural networks

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Seventy-five percent accuracy in protein secondary structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Protein secondary structure prediction based on position-specific scoring matrices

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

Prediction of protein secondary structure and active sites using the alignment of homologous sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm.

1 reference

https://api.crossref.org/works/10.1016%2FS0167-4838%2801%2900253-9

7 January 2021

10.1016/S0167-4838(01)00253-9

Identifiers

DOI

1 reference

18 June 2017

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