(Q30342733)

14 August 2017

The HU-DNA binding interaction probed with UV resonance Raman spectroscopy: structural elements of specificity. (English)

1 reference

14 August 2017

Kristi Wojtuszewski

1

1 reference

PMC publication ID

2280020

14 August 2017

Ishita Mukerji

series ordinal

2

1 reference

14 August 2017

1 September 2004

1 reference

14 August 2017

1 reference

14 August 2017

13

1 reference

14 August 2017

9

1 reference

14 August 2017

2416-2428

1 reference

Supercoiling and denaturation in Gal repressor/heat unstable nucleoid protein (HU)-mediated DNA looping

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

Flexible DNA bending in HU-DNA cocrystal structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

Structure and dynamics of the DNA-binding protein HU of B. stearothermophilus investigated by Raman and ultraviolet-resonance Raman spectroscopy

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

HU binding to bent DNA: a fluorescence resonance energy transfer and anisotropy study

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

HU: promoting or counteracting DNA compaction?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

HU binding to DNA: evidence for multiple complex formation and DNA bending

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

The histone-like protein HU binds specifically to DNA recombination and repair intermediates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

Nonsequence-specific DNA recognition: a structural perspective

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

The binding motif recognized by HU on both nicked and cruciform DNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

Raman spectroscopy of protein and nucleic acid assemblies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

UV resonance Raman-selective amide vibrational enhancement: quantitative methodology for determining protein secondary structure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

Repressor induced site-specific binding of HU for transcriptional regulation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

A UV resonance Raman study of hairpin dimer helices of d(A-G)10 at neutral pH containing intercalated dA residues and alternating dG tetrads

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

HU protein of Escherichia coli binds specifically to DNA that contains single-strand breaks or gaps

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

Raman spectroscopy of DNA and proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

Solution structure of the HU protein from Bacillus stearothermophilus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

Histonelike proteins of bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

A protein structural motif that bends DNA

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

Characterization of a novel, low-molecular-weight DNA-binding protein from Escherichia coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

3-A resolution structure of a protein with histone-like properties in prokaryotes.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

HU protein employs similar mechanisms of minor-groove recognition in binding to different B-DNA sites: demonstration by Raman spectroscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

UV resonance Raman and circular dichroism studies of a DNA duplex containing an A(3)T(3) tract: evidence for a premelting transition and three-centered H-bonds

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

Anatomy of a flexer-DNA complex inside a higher-order transposition intermediate.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

Participation of the flank regions of the integration host factor protein in the specificity and stability of DNA binding.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2280020

Sequence-directed curvature of DNA

26 November 2018

1 reference

12 December 2020

Structural details of an adenine tract that does not cause DNA to bend

1 reference

12 December 2020

Tyrosine hydrogen-bonding and environmental effects in proteins probed by ultraviolet resonance Raman spectroscopy

1 reference

12 December 2020

Cooperativity in A-tract structure and the bending properties of composite TnAn blocks

1 reference

12 December 2020

Genetic and biochemical analysis of the integration host factor of Escherichia coli

1 reference

12 December 2020

Site-specific HU binding in the Mu transpososome: conversion of a sequence-independent DNA-binding protein into a chemical nuclease

1 reference

12 December 2020

A UV resonance Raman study of d(A+-G)10, a single-stranded helix without stacked or paired bases

1 reference

12 December 2020

Making DNA do a U-turn: IHF and related proteins

1 reference

12 December 2020

Nucleic Acid Structure Investigated by UV Resonance Raman Spectroscopy: Protonation Effects and A-Tract Structure

1 reference

12 December 2020

The high-resolution structure of DNA-binding protein HU from Bacillus stearothermophilus

1 reference

12 December 2020

Differential binding of the Escherichia coli HU, homodimeric forms and heterodimeric form to linear, gapped and cruciform DNA

1 reference

12 December 2020

Supercoiling-dependent site-specific binding of HU to naked Mu DNA

1 reference

12 December 2020

Identifiers

DOI

10.1110/PS.04730204

1 reference

14 August 2017

1 reference

PMC publication ID

2280020

14 August 2017

PubMed publication ID

15322284

1 reference

PMC publication ID

2280020