(Q30351711)

14 September 2017

Mutagenesis-based definitions and probes of residue burial in proteins. (English)

1 reference

14 September 2017

Kanika Bajaj

1

1 reference

14 September 2017

Purbani Chakrabarti

series ordinal

2

1 reference

14 September 2017

Raghavan Varadarajan

series ordinal

3

1 reference

14 September 2017

language of work or name

English

0 references

publication date

26 October 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

14 September 2017

1 reference

14 September 2017

102

1 reference

14 September 2017

45

1 reference

14 September 2017

16221-16226

1 reference

Thermodynamic prediction of protein neutrality

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

The CCP4 suite: programs for protein crystallography

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Protein tolerance to random amino acid change

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Design of temperature-sensitive mutants solely from amino acid sequence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Synchrotron radiolysis and mass spectrometry: a new approach to research on the actin cytoskeleton.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Effect of signal peptide on the stability and folding kinetics of maltose binding protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Thermodynamic characterization of monomeric and dimeric forms of CcdB (controller of cell division or death B protein).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Thermodynamics of replacing an alpha-helical Pro residue in the P40S mutant of Escherichia coli thioredoxin

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Residue depth: a novel parameter for the analysis of protein structure and stability.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Thermodynamic and kinetic analysis of the Escherichia coli thioredoxin-C' fragment complementation system

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Crystal structure of CcdB, a topoisomerase poison from E. coli

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Evaluation of comparative protein structure modeling by MODELLER-3.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Conformational stabilities of Escherichia coli RNase HI variants with a series of amino acid substitutions at a cavity within the hydrophobic core.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Identification of surface residues mediating tissue factor binding and catalytic function of the serine protease factor VIIa

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Contribution of the tyrosines to the structure and function of the human U1A N-terminal RNA binding domain

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Genetic studies of the Lac repressor. XV: 4000 single amino acid substitutions and analysis of the resulting phenotypes on the basis of the protein structure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Thermal stability determinants of chicken egg-white lysozyme core mutants: hydrophobicity, packing volume, and conserved buried water molecules

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

The F plasmid CcdB protein induces efficient ATP-dependent DNA cleavage by gyrase.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

In vivo characterization of mutants of the bacteriophage f1 gene V protein isolated by saturation mutagenesis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Recombinant proteins can be isolated from E. coli cells by repeated cycles of freezing and thawing.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

The interpretation of protein structures: Estimation of static accessibility

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Environment and exposure to solvent of protein atoms. Lysozyme and insulin

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Hydrophobicity of amino acid residues in globular proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Interior and surface of monomeric proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Isolation and analysis of arc repressor mutants: evidence for an unusual mechanism of DNA binding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Bacteriophage lambda cro mutations: effects on activity and intracellular degradation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Electrostatic interactions in wild-type and mutant recombinant human myoglobins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Accommodation of single amino acid insertions by the native state of staphylococcal nuclease

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Systematic mutation of bacteriophage T4 lysozyme

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Structural and thermodynamic consequences of burying a charged residue within the hydrophobic core of T4 lysozyme

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

Thioredoxin catalyzes the reduction of insulin disulfides by dithiothreitol and dihydrolipoamide

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1283427

NETASA: neural network based prediction of solvent accessibility.

3 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505089102

Molecular basis of gyrase poisoning by the addiction toxin CcdB.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505089102

Destabilization of the Escherichia coli RNase H kinetic intermediate: switching between a two-state and three-state folding mechanism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505089102

Subunit dissociation affects DNA binding in a dimeric lac repressor produced by C-terminal deletion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505089102

Complete mutagenesis of the HIV-1 protease

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505089102

Alternative packing arrangements in the hydrophobic core of λrepresser

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0505089102

Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16251276

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Determination of protein secondary structure and solvent accessibility using site-directed fluorescence labeling. Studies of T4 lysozyme using the fluorescent probe monobromobimane

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16251276

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0505089102

1 reference

14 September 2017

0 references

1 reference

14 September 2017

PubMed publication ID

16251276

1 reference