(Q30352247)

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Fatty acid binding proteins: same structure but different binding mechanisms? Molecular dynamics simulations of intestinal fatty acid binding protein.

scientific article

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

Fatty acid binding proteins: same structure but different binding mechanisms? Molecular dynamics simulations of intestinal fatty acid binding protein. (English)

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

molecular dynamics simulation

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author name string

Ran Friedman

1

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

Esther Nachliel

2

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

Menachem Gutman

3

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

language of work or name

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publication date

16 December 2005

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Europe PubMed Central

PMC publication ID

16 November 2017

number of pages

11

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based on heuristic

inferred from page(s)

Biophysical Journal

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

90

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

5

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

1535-1545

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

Protein surface dynamics: interaction with water and small solutes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Molecular dynamics simulations of the adipocyte lipid binding protein reveal a novel entry site for the ligand

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Induced fit and the entropy of structural adaptation in the complexation of CAP and lambda-repressor with cognate DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Solution structure of human intestinal fatty acid binding protein with a naturally-occurring single amino acid substitution (A54T) that is associated with altered lipid metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Simulations of apo and holo-fatty acid binding protein: structure and dynamics of protein, ligand and internal water.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

The mammalian fatty acid-binding protein multigene family: molecular and genetic insights into function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

A "structural" water molecule in the family of fatty acid binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Properties and crystal structure of a beta-barrel folding mutant

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Structure and dynamics of the fatty acid binding cavity in apo rat intestinal fatty acid binding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Interaction of rat hormone-sensitive lipase with adipocyte lipid-binding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Binding kinetics of engineered mutants provide insight about the pathway for entering and exiting the intestinal fatty acid binding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Targeted disruption of the adipocyte lipid-binding protein (aP2 protein) gene impairs fat cell lipolysis and increases cellular fatty acid levels.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Epidermal growth factor regulates fatty acid uptake and metabolism in Caco-2 cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Simulations of fatty acid-binding proteins. II. Sites for discrimination of monounsaturated ligands

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Simulations of fatty acid-binding proteins suggest sites important for function. I. Stearic acid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Cellular differentiation and I-FABP protein expression modulate fatty acid uptake and diffusion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Solution structure of human intestinal fatty acid binding protein: implications for ligand entry and exit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Biochemical and crystallographic analyses of a portal mutant of the adipocyte lipid-binding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Discrete backbone disorder in the nuclear magnetic resonance structure of apo intestinal fatty acid-binding protein: implications for the mechanism of ligand entry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Ligand binding alters the backbone mobility of intestinal fatty acid-binding protein as monitored by 15N NMR relaxation and 1H exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Flexibility is a likely determinant of binding specificity in the case of ileal lipid binding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

VMD: visual molecular dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Intestinal and liver fatty acid binding proteins differentially affect fatty acid uptake and esterification in L-cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

The adipocyte lipid-binding protein at 1.6-A resolution. Crystal structures of the apoprotein and with bound saturated and unsaturated fatty acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Escherichia coli-derived rat intestinal fatty acid binding protein with bound myristate at 1.5 A resolution and I-FABPArg106-->Gln with bound oleate at 1.74 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

X-ray crystallographic structures of adipocyte lipid-binding protein complexed with palmitate and hexadecanesulfonic acid. Properties of cavity binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

A possible route for the release of fatty acid from fatty acid-binding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Adipocyte lipid-binding protein complexed with arachidonic acid. Titration calorimetry and X-ray crystallographic studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Crystal structure of rat intestinal fatty-acid-binding protein. Refinement and analysis of the Escherichia coli-derived protein with bound palmitate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Refinement of the structure of recombinant rat intestinal fatty acid-binding apoprotein at 1.2-A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Crystal structure of recombinant murine adipocyte lipid-binding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Refinement of the structure of Escherichia coli-derived rat intestinal fatty acid binding protein with bound oleate to 1.75-A resolution. Correlation with the structures of the apoprotein and the protein with bound palmitate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

3 June 2018

Surface properties of adipocyte lipid-binding protein: Response to lipid binding, and comparison with homologous proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

26 November 2018

Thermodynamics of fatty acid binding to engineered mutants of the adipocyte and intestinal fatty acid-binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

26 November 2018

PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

26 November 2018

Kinetics of fatty acid interactions with fatty acid binding proteins from adipocyte, heart, and intestine.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367305

26 November 2018

Molecular dynamics simulations of adipocyte lipid-binding protein: effect of electrostatics and acyl chain unsaturation

1 reference

https://pubmed.ncbi.nlm.nih.gov/16361342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular dynamics simulation of the stability of a 22-residue alpha-helix in water and 30% trifluoroethanol

1 reference

https://pubmed.ncbi.nlm.nih.gov/16361342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Intestinal fatty acid-binding protein expression stimulates fibroblast fatty acid esterification

1 reference

https://pubmed.ncbi.nlm.nih.gov/16361342

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based on heuristic

inferred from PubMed ID database lookup

Impact of Cl- and Na+ ions on simulated structure and dynamics of betaARK1 PH domain

1 reference

https://pubmed.ncbi.nlm.nih.gov/16361342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamics of internal water in fatty acid binding protein: computer simulations and comparison with experiments

1 reference

https://pubmed.ncbi.nlm.nih.gov/16361342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Absolute and relative entropies from computer simulation with applications to ligand binding

1 reference

https://pubmed.ncbi.nlm.nih.gov/16361342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A polymorphism in the human intestinal fatty acid binding protein alters fatty acid transport across Caco-2 cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/16361342

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1529/BIOPHYSJ.105.071571

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

ResearchGate publication ID

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