(Q30354439)

20 June 2017

Analyzing proteomes and protein function using graphical comparative analysis of tandem mass spectrometry results. (English)

1 reference

20 June 2017

K Jill McAfee

1

1 reference

20 June 2017

Dexter T Duncan

series ordinal

2

1 reference

20 June 2017

Michael Assink

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3

1 reference

20 June 2017

Andrew J Link

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4

1 reference

20 June 2017

16 May 2006

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Molecular & Cellular Proteomics

20 June 2017

1 reference

20 June 2017

5

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20 June 2017

8

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20 June 2017

1497-1513

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Development of an LC-MALDI method for the analysis of protein complexes

20 June 2017

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Direct analysis of protein complexes using mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Probability-based protein identification by searching sequence databases using mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

TANDEM: matching proteins with tandem mass spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Qscore: an algorithm for evaluating SEQUEST database search results

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Probability-based validation of protein identifications using a modified SEQUEST algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

A statistical model for identifying proteins by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Antigenicity analysis of different regions of the severe acute respiratory syndrome coronavirus nucleocapsid protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Improving sensitivity in shotgun proteomics using a peptide-centric database with reduced complexity: protease cleavage and SCX elution rules from data mining of MS/MS spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Selective incorporation of isotopically labeled amino acids for identification of intact proteins on a proteome-wide level

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Reproducibility of quantitative proteomic analyses of complex biological mixtures by multidimensional protein identification technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

In-Gel Stable-Isotope Labeling (ISIL): a strategy for mass spectrometry-based relative quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Changes in the protein expression of yeast as a function of carbon source

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

A proteomic view of the Plasmodium falciparum life cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

MapQuant: open-source software for large-scale protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Cluster analysis of mass spectrometry data reveals a novel component of SAGA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

A systematic approach to modeling, capturing, and disseminating proteomics experimental data

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification Data

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Guidelines for the next 10 years of proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

A common open representation of mass spectrometry data and its application to proteomics research

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

PRIDE: the proteomics identifications database

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

21 January 2018

The PeptideAtlas project

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

21 January 2018

What is mzXML good for?

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Computational analysis of microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Computational strategies for analyzing data in gene expression microarray experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

An integrated strategy for the optimization of microarray data interpretation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Purifying protein complexes for mass spectrometry: applications to protein translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Code developments to improve the efficiency of automated MS/MS spectra interpretation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Optimal alignments in linear space

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Identification of two novel TAF subunits of the yeast Saccharomyces cerevisiae TFIID complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Cluster analysis and display of genome-wide expression patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Open source clustering software

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

SALSA: a pattern recognition algorithm to detect electrophile-adducted peptides by automated evaluation of CID spectra in LC-MS-MS analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Shotgun identification of protein modifications from protein complexes and lens tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

MHC-bound antigens and proteomics for novel target discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

The use of mass spectrometry to identify antigens from proteasome processing

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Proteomic analysis of post-translational modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Error-tolerant identification of peptides in sequence databases by peptide sequence tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Quality assessment of microarrays: visualization of spatial artifacts and quantitation of regional biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Common interchange standards for proteomics data: Public availability of tools and schema

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

A method for reducing the time required to match protein sequences with tandem mass spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

RADARS, a bioinformatics solution that automates proteome mass spectral analysis, optimises protein identification, and archives data in a relational database

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Comparison of methods for sequential screening of large compound sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

Characterization of the in vivo phosphorylation sites of the mRNA.cap-binding complex proteins eukaryotic initiation factor-4E and p20 in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.T500027-MCP200

10.1074/MCP.T500027-MCP200

21 January 2018

Identifiers

DOI

1 reference

20 June 2017

1 reference