(Q30355056)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16791739%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

title

Chemically accurate protein structures: validation of protein NMR structures by comparison of measured and predicted pKa values (English)

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25 December 2019

2

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25 December 2019

author name string

N Powers

series ordinal

1

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25 December 2019

publication date

1 May 2006

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16791739%20AND%20SRC:MED&resulttype=core&format=json

Journal of Biomolecular NMR

25 December 2019

published in

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16791739%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

volume

35

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25 December 2019

issue

1

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25 December 2019

page(s)

39-51

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https://scigraph.springernature.com/pub.10.1007/s10858-006-9003-3

25 December 2019

exact match

0 references

cites work

NMR structure of ribonuclease HI from Escherichia coli

1 reference

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https://api.crossref.org/works/10.1007%2FS10858-006-9003-3

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

21 January 2018

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https://api.crossref.org/works/10.1007%2FS10858-006-9003-3

High-resolution three-dimensional structure of ribonuclease A in solution by nuclear magnetic resonance spectroscopy

21 January 2018

1 reference

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https://api.crossref.org/works/10.1007%2FS10858-006-9003-3

The role of acidic amino acid residues in the structural stability of snake cardiotoxins

21 January 2018

1 reference

12 December 2020

Molecular structure of a new family of ribonucleases

1 reference

12 December 2020

X-ray crystal structure of the complex of human leukocyte elastase (PMN elastase) and the third domain of the turkey ovomucoid inhibitor

1 reference

12 December 2020

Three-dimensional solution structure of an insulin dimer. A study of the B9(Asp) mutant of human insulin using nuclear magnetic resonance, distance geometry and restrained molecular dynamics

1 reference

12 December 2020

Microscopic pKa values of Escherichia coli thioredoxin.

1 reference

12 December 2020

New strategies for protein crystal growth

1 reference

12 December 2020

Validation of nuclear magnetic resonance structures of proteins and nucleic acids: hydrogen geometry and nomenclature

1 reference

12 December 2020

A refined solution structure of hen lysozyme determined using residual dipolar coupling data

1 reference

12 December 2020

Characterization of pKa values and titration shifts in the cytotoxic ribonuclease alpha-sarcin by NMR. Relationship between electrostatic interactions, structure, and catalytic function.

1 reference

12 December 2020

Role of water in plasticity, stability, and action of proteins: the crystal structures of lysozyme at very low levels of hydration

1 reference

12 December 2020

Effects of buried charged groups on cysteine thiol ionization and reactivity in Escherichia coli thioredoxin: structural and functional characterization of mutants of Asp 26 and Lys 57.

1 reference

12 December 2020

Calculations of electrostatic interactions and pKas in the active site of Escherichia coli thioredoxin

1 reference

12 December 2020

X-ray structure of a monoclinic form of hen egg-white lysozyme crystallized at 313 K. Comparison of two independent molecules

1 reference

12 December 2020

New applications of simulated annealing in X-ray crystallography and solution NMR.

1 reference

12 December 2020

Characterization of pH titration shifts for all the nonlabile proton resonances a protein by two-dimensional NMR: the case of mouse epidermal growth factor

1 reference

12 December 2020

Structural basis of perturbed pKa values of catalytic groups in enzyme active sites

1 reference

12 December 2020

Proton-translocating carboxyl of subunit c of F1Fo H(+)-ATP synthase: the unique environment suggested by the pKa determined by 1H NMR.

1 reference

12 December 2020

Solution structure of cardiotoxin V from Naja naja atra

1 reference

12 December 2020

Ionization equilibria for side-chain carboxyl groups in oxidized and reduced human thioredoxin and in the complex with its target peptide from the transcription factor NF kappa B.

1 reference

12 December 2020

Ionic interactions in crystalline bovine pancreatic ribonuclease A

1 reference

12 December 2020

Stability and dynamics of domain-swapped bovine-seminal ribonuclease

1 reference

12 December 2020

Solution structure of turkey ovomucoid third domain as determined from nuclear magnetic resonance data

1 reference

12 December 2020

MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes

1 reference

12 December 2020

Crystal structure of cardiotoxin V from Taiwan cobra venom: pH-dependent conformational change and a novel membrane-binding motif identified in the three-finger loops of P-type cardiotoxin

1 reference

12 December 2020

Individual ionization constants of all the carboxyl groups in ribonuclease HI from Escherichia coli determined by NMR.

1 reference

12 December 2020

Role of the catalytic triad and oxyanion hole in acetylcholinesterase catalysis: an ab initio QM/MM study

1 reference

12 December 2020

Detergents as tools in membrane biochemistry

1 reference

12 December 2020

The ATP synthase--a splendid molecular machine

1 reference

12 December 2020

Refinement of protein structures in explicit solvent

1 reference

12 December 2020

ATP synthesis driven by proton transport in F1F0-ATP synthase

1 reference

12 December 2020

Optimizing the hydrogen-bond network in Poisson-Boltzmann equation-based pK(a) calculations.

1 reference

12 December 2020

Role of protein-water hydrogen bond dynamics in the protein dynamical transition

1 reference

12 December 2020

Determination of the three-dimensional solution structure of barnase using nuclear magnetic resonance spectroscopy

1 reference

12 December 2020

pH, ionic strength, and temperature dependences of ionization equilibria for the carboxyl groups in turkey ovomucoid third domain.

1 reference

12 December 2020

Solution structure of the transmembrane H+-transporting subunit c of the F1F0 ATP synthase

1 reference

12 December 2020

The NMR solution structure and characterization of pH dependent chemical shifts of the beta-elicitin, cryptogein

1 reference

12 December 2020

Protein crystallization

1 reference

12 December 2020

Mechanism of transmembrane signaling: insulin binding and the insulin receptor

1 reference

12 December 2020

Mutation of conserved residues in Escherichia coli thioredoxin: Effects on stability and function

1 reference

12 December 2020

The mechanism of detergent solubilization of liposomes and protein-containing membranes

1 reference

12 December 2020

Protein NMR spectroscopy in structural genomics

1 reference

12 December 2020

Proline cis-trans isomers in calbindin D9k observed by X-ray crystallography

1 reference

12 December 2020

On the evaluation and optimization of protein X-ray structures for pKa calculations

1 reference

12 December 2020

X-ray refinement of protein structures by simulated annealing: test of the method on myohemerythrin

1 reference

12 December 2020

Structural details of ribonuclease H from Escherichia coli as refined to an atomic resolution

1 reference

12 December 2020

High-resolution structure of calcium-loaded calbindin D9k

1 reference

12 December 2020

Heterogeneity and inaccuracy in protein structures solved by X-ray crystallography.

1 reference

12 December 2020

Crystal structures of reduced, oxidized, and mutated human thioredoxins: evidence for a regulatory homodimer

1 reference

12 December 2020

Improving the quality of protein structures derived by NMR spectroscopy

1 reference

12 December 2020

Nuclear magnetic resonance solution structure of hirudin(1-51) and comparison with corresponding three-dimensional structures determined using the complete 65-residue hirudin polypeptide chain

1 reference

12 December 2020

Site-directed mutagenesis of bovine pancreatic ribonuclease: lysine-41 and aspartate-121

1 reference

12 December 2020

New methods of structure refinement for macromolecular structure determination by NMR.

1 reference

12 December 2020

Structure of ubiquitin refined at 1.8 A resolution

1 reference

12 December 2020

Molecular dynamics applied to X-ray structure refinement

1 reference

12 December 2020

Structural details of Asp(B9) human insulin at low pH from two-dimensional NMR titration studies.

1 reference

12 December 2020

SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling

1 reference

12 December 2020

Measurement and modelling of sequence-specific pKa values of lysine residues in calbindin D9k

1 reference

12 December 2020

Electrostatic interactions in the active site of the N-terminal thioredoxin-like domain of protein disulfide isomerase

1 reference

12 December 2020

Very fast empirical prediction and rationalization of protein pKa values

1 reference

12 December 2020

Three-dimensional solution structure of beta cryptogein, a beta elicitin secreted by a phytopathogenic fungus Phytophthora cryptogea

1 reference

12 December 2020

Electrostatic interactions in ubiquitin: stabilization of carboxylates by lysine amino groups.

1 reference

12 December 2020

Quantitative evaluation of experimental NMR restraints.

1 reference

12 December 2020

The high-resolution three-dimensional solution structures of the oxidized and reduced states of human thioredoxin

1 reference

12 December 2020

Combining conformational flexibility and continuum electrostatics for calculating pK(a)s in proteins

1 reference

12 December 2020

Structure of the subunit c oligomer in the F1Fo ATP synthase: model derived from solution structure of the monomer and cross-linking in the native enzyme

1 reference

12 December 2020

Transient hydrogen bonds identified on the surface of the NMR solution structure of Hirudin

1 reference

12 December 2020

Solution conformation of proteinase inhibitor IIA from bull seminal plasma by 1H nuclear magnetic resonance and distance geometry

1 reference

12 December 2020

Errors in protein structures

1 reference

12 December 2020

Amide proton titration shifts in bull seminal inhibitor IIA by two-dimensional correlated 1H nuclear magnetic resonance (COSY). Manifestation of conformational equilibria involving carboxylate groups

1 reference

12 December 2020

THEMATICS: a simple computational predictor of enzyme function from structure

1 reference

12 December 2020

Solution structure of murine epidermal growth factor determined by NMR spectroscopy and refined by energy minimization with restraints

1 reference

12 December 2020

Calculating pKa values in enzyme active sites

1 reference

12 December 2020

Determination of the solution structure of Apo calbindin D9k by NMR spectroscopy

1 reference

12 December 2020

Assessing precision and accuracy of protein structures derived from NMR data

1 reference

12 December 2020

Prediction of functionally important residues based solely on the computed energetics of protein structure.

1 reference

12 December 2020

Determining the structures of large proteins and protein complexes by NMR.

1 reference

12 December 2020

Validation of protein models derived from experiment

1 reference

12 December 2020

The highly refined solution structure of the cytotoxic ribonuclease alpha-sarcin reveals the structural requirements for substrate recognition and ribonucleolytic activity

1 reference

12 December 2020

Measurement of the individual pKa values of acidic residues of hen and turkey lysozymes by two-dimensional 1H NMR.

1 reference

12 December 2020

Empirical relationships between protein structure and carboxyl pKa values in proteins.

1 reference

12 December 2020

The determinants of carboxyl pKa values in turkey ovomucoid third domain

1 reference

12 December 2020

pKA values of carboxyl groups in the native and denatured states of barnase: the pKA values of the denatured state are on average 0.4 units lower than those of model compounds

1 reference

12 December 2020

Crystal structure of a fungal elicitor secreted by Phytophthora cryptogea, a member of a novel class of plant necrotic proteins

1 reference

12 December 2020

Ribonuclease S-peptide as a carrier in fusion proteins.

1 reference

12 December 2020

10.1007/S10858-006-9003-3

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16791739%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

1 reference