(Q30360131)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24623120%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

review article

1 reference

title

The construction of an amino acid network for understanding protein structure and function (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24623120%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1

1 reference

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10 March 2020

Jianhong Zhou

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24623120%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Guang Hu

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24623120%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Bairong Shen

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24623120%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

author name string

Maomin Sun

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24623120%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Jiajia Chen

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24623120%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

publication date

13 March 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24623120%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24623120%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

volume

46

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24623120%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24623120%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

page(s)

1419-1439

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24623120%20AND%20SRC:MED&resulttype=core&format=json

Hydrophobic, hydrophilic, and charged amino acid networks within protein

10 March 2020

cites work

1 reference

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Matching theory and experiment in protein folding

21 January 2018

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Classes of small-world networks

21 January 2018

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Principles that govern the folding of protein chains

21 January 2018

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Conserved amino acids participate in the structure networks deputed to intramolecular communication in the lutropin receptor.

21 January 2018

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Computing topological parameters of biological networks.

21 January 2018

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Small-world communication of residues and significance for protein dynamics

21 January 2018

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Screened nonbonded interactions in native proteins manipulate optimal paths for robust residue communication.

21 January 2018

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Assortative mixing in Protein Contact Networks and protein folding kinetics

21 January 2018

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Emergence of Scaling in Random Networks

21 January 2018

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21 January 2018

The Protein Data Bank

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Network analysis of protein dynamics

21 January 2018

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Protein interaction networks from yeast to human

21 January 2018

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A network representation of protein structures: implications for protein stability.

21 January 2018

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Analysis of homodimeric protein interfaces by graph-spectral methods.

21 January 2018

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Insights into the quaternary association of proteins through structure graphs: a case study of lectins

21 January 2018

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Network properties of protein-decoy structures

21 January 2018

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Clear cell renal cell carcinoma associated microRNA expression signatures identified by an integrated bioinformatics analysis

21 January 2018

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Integration of biological networks and gene expression data using Cytoscape

21 January 2018

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Disordered proteins and network disorder in network descriptions of protein structure, dynamics and function: hypotheses and a comprehensive review

21 January 2018

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Efficient identification of critical residues based only on protein structure by network analysis.

21 January 2018

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Protein cutoff scanning: A comparative analysis of cutoff dependent and cutoff free methods for prospecting contacts in proteins.

21 January 2018

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Understanding protein structure from a percolation perspective.

21 January 2018

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Residue centrality, functionally important residues, and active site shape: analysis of enzyme and non-enzyme families

21 January 2018

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Protein contact networks: an emerging paradigm in chemistry

21 January 2018

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Topological determinants of protein folding

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Topological analysis and interactive visualization of biological networks and protein structures

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

NetworkView: 3D display and analysis of protein·RNA interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Universality in protein residue networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

On power-law relationships of the Internet topology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Structural insights into retinitis pigmentosa from unfolding simulations of rhodopsin mutants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Variations in clique and community patterns in protein structures during allosteric communication: investigation of dynamically equilibrated structures of methionyl tRNA synthetase complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Dynamics of lysozyme structure network: probing the process of unfolding

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Community structure in social and biological networks

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Theoretical Studies of Protein Folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Protein structure networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Uncovering network systems within protein structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Ligand dependent intra and inter subunit communication in human tryptophanyl tRNA synthetase as deduced from the dynamics of structure networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Potential application of network descriptions for understanding conformational changes and protonation states of ABC transporters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

A lattice model for protein structure prediction at low resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

The topology and dynamics of protein complexes: insights from intra- molecular network theory.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

A comprehensive two-hybrid analysis to explore the yeast protein interactome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

The stability of proteins in extreme environments

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Scoring function based on weighted residue network

21 January 2018

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Topological determinants of protein unfolding rates.

21 January 2018

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Scale invariance in road networks

21 January 2018

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Identification of side-chain clusters in protein structures by a graph spectral method.

21 January 2018

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Aromatic clusters: a determinant of thermal stability of thermophilic proteins

21 January 2018

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Stabilizing interactions in the dimer interface of alpha-subunit in Escherichia coli RNA polymerase: a graph spectral and point mutation study

21 January 2018

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Novel feature for catalytic protein residues reflecting interactions with other residues

21 January 2018

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Predicting disease-associated substitution of a single amino acid by analyzing residue interactions

21 January 2018

1 reference

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Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms

21 January 2018

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RING: networking interacting residues, evolutionary information and energetics in protein structures.

21 January 2018

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Residue network in protein native structure belongs to the universality class of a three-dimensional critical percolation cluster

21 January 2018

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Computational tools for the interactive exploration of proteomic and structural data.

21 January 2018

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JGromacs: a Java package for analyzing protein simulations

21 January 2018

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A simple approach for protein structure discrimination based on the network pattern of conserved hydrophobic residues.

21 January 2018

1 reference

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Assortative Mixing in Networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Mixing patterns in networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Node centrality in weighted networks: Generalizing degree and shortest paths

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Network pattern of residue packing in helical membrane proteins and its application in membrane protein structure prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Modeling allosteric signal propagation using protein structure networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Dynamical and Correlation Properties of the Internet

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Substrate uptake and protein stability relationship in mammalian histidine decarboxylase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

The modular architecture of protein-protein binding interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

A travel guide to Cytoscape plugins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Interaction of DNA with clusters of amino acids in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Insights into protein-DNA interactions through structure network analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Wordom: a user-friendly program for the analysis of molecular structures, trajectories, and free energy surfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Dynamical networks in tRNA:protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Cytoscape: a software environment for integrated models of biomolecular interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

A relationship between protein stability and protein function

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Identification of domains and domain interface residues in multidomain proteins from graph spectral method.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Cytoscape 2.8: new features for data integration and network visualization

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Organization, development and function of complex brain networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

A gene-coexpression network for global discovery of conserved genetic modules

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Perturbation centrality and turbine: a novel centrality measure obtained using a versatile network dynamics tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Computational inference and analysis of genetic regulatory networks via a supervised combinatorial-optimization pattern

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Analysis and network representation of hotspots in protein interfaces using minimum cut trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Exploring residue component contributions to dynamical network models of allostery

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

A graph theoretic approach to protein structure selection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Three key residues form a critical contact network in a protein folding transition state

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Small-world view of the amino acids that play a key role in protein folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Interaction energy based protein structure networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Intra and inter-molecular communications through protein structure network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Collective dynamics of 'small-world' networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Evolution of protein structures and interactions from the perspective of residue contact networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Amino acid network for the discrimination of native protein structures from decoys.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Analyzing and visualizing residue networks of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

The effect of backbone on the small-world properties of protein contact maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Network Analysis of Protein Structures Identifies Functional Residues

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Classification of Protein-DNA Complexes Based on Structural Descriptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6

Substantial increase of protein stability by multiple disulphide bonds

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00726-014-1710-6