(Q30368080)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18320330%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

title

The war of tools: how can NMR spectroscopists detect errors in their structures? (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18320330%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18320330%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

author name string

Edoardo Saccenti

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18320330%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

publication date

5 March 2008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18320330%20AND%20SRC:MED&resulttype=core&format=json

Journal of Biomolecular NMR

3 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18320330%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

volume

40

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18320330%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18320330%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

page(s)

251-261

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18320330%20AND%20SRC:MED&resulttype=core&format=json

Synthetic, structural and biological studies of the ubiquitin system: the total chemical synthesis of ubiquitin

3 January 2020

cites work

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS10858-008-9228-4

Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA

21 January 2018

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12 December 2020

Automated assignment of NOESY NMR spectra using a knowledge based method (KNOWNOE)

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12 December 2020

The Protein Data Bank

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12 December 2020

Torsion angle dynamics for NMR structure calculation with the new program DYANA

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12 December 2020

Assessing the quality of solution nuclear magnetic resonance structures by complete cross-validation.

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12 December 2020

TAP score: torsion angle propensity normalization applied to local protein structure evaluation.

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12 December 2020

Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy

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12 December 2020

Assignment validation software suite for the evaluation and presentation of protein resonance assignment data

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12 December 2020

BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank

1 reference

12 December 2020

Validation of protein crystal structures

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12 December 2020

MOLMOL: a program for display and analysis of macromolecular structures

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12 December 2020

Exploring the limits of precision and accuracy of protein structures determined by nuclear magnetic resonance spectroscopy.

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12 December 2020

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

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12 December 2020

MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes

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12 December 2020

An integrated platform for automated analysis of protein NMR structures.

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12 December 2020

Evaluating protein structures determined by structural genomics consortia

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12 December 2020

Quality of protein crystal structures.

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12 December 2020

Stereochemical quality of protein structure coordinates

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12 December 2020

Paramagnetism-based versus classical constraints: an analysis of the solution structure of Ca Ln calbindin D9k

1 reference

12 December 2020

A method for evaluating the structural quality of protein models by using higher-order phi-psi pairs scoring

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12 December 2020

Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics

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12 December 2020

RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank

1 reference

12 December 2020

Quality assessment of NMR structures: a statistical survey

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12 December 2020

PDB Improvement Starts with Data Deposition

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12 December 2020

The victor/FRST function for model quality estimation.

1 reference

12 December 2020

A use of Ramachandran potentials in protein solution structure determinations

1 reference

12 December 2020

The precision of NMR structure ensembles revisited

1 reference

12 December 2020

Backbone-Only Protein Solution Structures with a Combination of Classical and Paramagnetism-Based Constraints: A Method that Can Be Scaled to Large Molecules

1 reference

12 December 2020

Comparison of X-ray and NMR structures: Is there a systematic difference in residue contacts between X-ray- and NMR-resolved protein structures?

1 reference

12 December 2020

Stereochemistry of polypeptide chain configurations

1 reference

12 December 2020

NMR structure determination in solution: a critique and comparison with X-ray crystallography

1 reference

12 December 2020

Heterogeneity and inaccuracy in protein structures solved by X-ray crystallography.

1 reference

12 December 2020

ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins

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12 December 2020

Improving the quality of protein structures derived by NMR spectroscopy

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12 December 2020

Traditional biomolecular structure determination by NMR spectroscopy allows for major errors

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12 December 2020

HARMONY: a server for the assessment of protein structures.

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12 December 2020

Objectively judging the quality of a protein structure from a Ramachandran plot

1 reference

12 December 2020

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

1 reference

12 December 2020

Recognition of errors in three-dimensional structures of proteins

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12 December 2020

Comparison of protein structures determined by NMR in solution and by X-ray diffraction in single crystals

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12 December 2020

The CCPN data model for NMR spectroscopy: development of a software pipeline

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12 December 2020

DRESS: a database of REfined solution NMR structures.

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12 December 2020

Errors in protein structures

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12 December 2020

A large data set comparison of protein structures determined by crystallography and NMR: statistical test for structural differences and the effect of crystal packing.

1 reference

12 December 2020

Definition of a new information-based per-residue quality parameter

1 reference

12 December 2020

An atomic-level investigation of the disease-causing A629P mutant of the Menkes protein, ATP7A.

1 reference

12 December 2020

An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction

1 reference

12 December 2020

Solution structure of the second PDZ domain of the neuronal adaptor X11alpha and its interaction with the C-terminal peptide of the human copper chaperone for superoxide dismutase.

1 reference

12 December 2020