(Q30371952)

12 October 2017

AIDA: ab initio domain assembly for automated multi-domain protein structure prediction and domain-domain interaction prediction. (English)

1 reference

protein structure prediction

12 October 2017

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1 reference

4

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PubMed publication ID

21 June 2017

2

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author name string

Dong Xu

series ordinal

1

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12 October 2017

Zhanwen Li

series ordinal

3

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12 October 2017

language of work or name

English

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publication date

19 February 2015

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12 October 2017

1 reference

12 October 2017

31

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12 October 2017

13

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12 October 2017

2098-2105

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AIDA: ab initio domain assembly server

12 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

FFAS-3D: improving fold recognition by including optimized structural features and template re-ranking

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

This Déjà vu feeling--analysis of multidomain protein evolution in eukaryotic genomes

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

How significant is a protein structure similarity with TM-score = 0.5?

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Improved prediction of protein side-chain conformations with SCWRL4

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Inferring protein-protein interactions from multiple protein domain combinations

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Protein structure prediction on the Web: a case study using the Phyre server

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Structural assembly of two-domain proteins by rigid-body docking

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Prediction of structures of multidomain proteins from structures of the individual domains

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Expansion of protein domain repeats

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Docking protein domains in contact space.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

FFAS03: a server for profile--profile sequence alignments

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Protein length in eukaryotic and prokaryotic proteomes

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Multi-domain proteins in the three kingdoms of life: orphan domains and other unassigned regions.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Scoring function for automated assessment of protein structure template quality

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

PISCES: a protein sequence culling server

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Evolution of the protein repertoire

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

4 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Protein secondary structure prediction based on position-specific scoring matrices

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Comparative protein modelling by satisfaction of spatial restraints

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Conformation of Polypeptides and Proteins

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481839

Multi-domain protein families and domain pairs: comparison with known structures and a random model of domain recombination

4 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV092

Docking to single-domain and multiple-domain proteins: old and new challenges.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV092

The folding and evolution of multidomain proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV092

Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV092

Protein domain decomposition using a graph-theoretic approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV092

10.1093/BIOINFORMATICS/BTV092

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/XuJLG15

12 October 2017

1 reference

DBLP Dataset 2021-01-02

release_46epiei3sfelneuffsnoezvrpm

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/46epiei3sfelneuffsnoezvrpm

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

12 October 2017

PubMed publication ID

25701568

1 reference