(Q30373060)

18 October 2017

A statistical physics perspective on alignment-independent protein sequence comparison (English)

1 reference

18 October 2017

1 reference

1 reference

Amit K. Chattopadhyay

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25810434%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

author name string

Diar Nasiev

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25810434%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Darren R Flower

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25810434%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

language of work or name

English

0 references

publication date

25 March 2015

1 reference

18 October 2017

6

1 reference

inferred from page(s)

published in

Bioinformatics

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25810434%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

volume

31

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25810434%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

issue

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25810434%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

page(s)

2469-2474

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25810434%20AND%20SRC:MED&resulttype=core&format=json

Pfam: the protein families database

7 June 2020

cites work

1 reference

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Benchmarking of protein descriptor sets in proteochemometric modeling (part 2): modeling performance of 13 amino acid descriptor sets

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Prediction of loop regions in protein sequence.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

AAindex: amino acid index database, progress report 2008

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Proteomic applications of automated GPCR classification

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Alignment-free sequence comparison-a review

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Twilight zone of protein sequence alignments

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

New chemical descriptors relevant for the design of biologically active peptides. A multivariate characterization of 87 amino acids

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Statistical comparison of established T-cell epitope predictors against a large database of human and murine antigens.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Structural relationship of streptavidin to the calycin protein superfamily

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Structure and sequence relationships in the lipocalins and related proteins

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Comparison of methods for searching protein sequence databases.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Prediction of protein antigenic determinants from amino acid sequences

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Aligning amino acid sequences: Comparison of commonly used methods

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Peptide quantitative structure-activity relationships, a multivariate approach.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

The classification of amino acid conservation.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

A measure of the similarity of sets of sequences not requiring sequence alignment

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Cluster analysis of amino acid indices for prediction of protein structure and function

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Amino acid substitution matrices from an information theoretic perspective

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Amino acid substitution matrices from protein blocks

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Contact time periods in immunological synapse.

4 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV167

A Cluster Separation Measure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV167

Identifying candidate subunit vaccines using an alignment-independent method based on principal amino acid properties.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV167

A Fuzzy Relative of the ISODATA Process and Its Use in Detecting Compact Well-Separated Clusters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV167

Persistence and first-passage properties in nonequilibrium systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV167

A cluster separation measure.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4514925

Global Persistence Exponent for Nonequilibrium Critical Dynamics

26 November 2018

1 reference

12 December 2020

Exact first-passage exponents of 1D domain growth: Relation to a reaction-diffusion model

1 reference

12 December 2020

Performance evaluation of amino acid substitution matrices

1 reference

12 December 2020

Predicting the topology of eukaryotic membrane proteins

1 reference

12 December 2020

10.1093/BIOINFORMATICS/BTV167

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25810434%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1 reference

journals/bioinformatics/ChattopadhyayNF15

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25810434%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

PubMed publication ID

25810434

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25810434%20AND%20SRC:MED&resulttype=core&format=json