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Applying undertaker cost functions to model quality assessment.
scientific article
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
2992551
retrieved
1 October 2017
title
Applying undertaker cost functions to model quality assessment.
(English)
1 reference
stated in
Europe PubMed Central
PMCID
2992551
retrieved
1 October 2017
author name string
John Archie
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
2992551
retrieved
1 October 2017
Kevin Karplus
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
2992551
retrieved
1 October 2017
language of work or name
English
0 references
publication date
1 May 2009
1 reference
stated in
Europe PubMed Central
PMCID
2992551
retrieved
1 October 2017
published in
Proteins
1 reference
stated in
Europe PubMed Central
PMCID
2992551
retrieved
1 October 2017
volume
75
1 reference
stated in
Europe PubMed Central
PMCID
2992551
retrieved
1 October 2017
issue
3
1 reference
stated in
Europe PubMed Central
PMCID
2992551
retrieved
1 October 2017
page(s)
550-555
1 reference
stated in
Europe PubMed Central
PMCID
2992551
retrieved
1 October 2017
cites work
Model quality assessment using distance constraints from alignments.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
retrieved
20 June 2018
PREDICT-2ND: a tool for generalized protein local structure prediction.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
retrieved
20 June 2018
Protein model quality assessment prediction by combining fragment comparisons and a consensus C(alpha) contact potential
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
retrieved
20 June 2018
Ranking predicted protein structures with support vector regression.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
retrieved
20 June 2018
Template-based modeling and free modeling by I-TASSER in CASP7.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
retrieved
20 June 2018
Automated server predictions in CASP7
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
retrieved
20 June 2018
Prediction of global and local model quality in CASP7 using Pcons and ProQ.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
retrieved
20 June 2018
Benchmarking consensus model quality assessment for protein fold recognition.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
retrieved
20 June 2018
New tools and expanded data analysis capabilities at the Protein Structure Prediction Center
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
retrieved
20 June 2018
Assessment of predictions in the model quality assessment category.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
retrieved
20 June 2018
Scoring function for automated assessment of protein structure template quality
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
retrieved
20 June 2018
Evaluation of local structure alphabets based on residue burial.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
retrieved
20 June 2018
Combining local-structure, fold-recognition, and new fold methods for protein structure prediction.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
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20 June 2018
A graph-theory algorithm for rapid protein side-chain prediction
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
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20 June 2018
LGA: A method for finding 3D similarities in protein structures
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
retrieved
20 June 2018
HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
retrieved
20 June 2018
Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992551
retrieved
26 November 2018
Identifiers
DOI
10.1002/PROT.22288
1 reference
stated in
Europe PubMed Central
PMCID
2992551
retrieved
1 October 2017
PMCID
2992551
1 reference
stated in
Europe PubMed Central
PMCID
2992551
retrieved
1 October 2017
PubMed ID
19004017
1 reference
stated in
Europe PubMed Central
PMCID
2992551
retrieved
1 October 2017
ResearchGate publication ID
23468460
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