(Q30390812)

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Structure of pleiotrophin- and hepatocyte growth factor-binding sulfated hexasaccharide determined by biochemical and computational approaches

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scholarly article

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Europe PubMed Central

PMC publication ID

13 October 2017

Structure of pleiotrophin- and hepatocyte growth factor-binding sulfated hexasaccharide determined by biochemical and computational approaches (English)

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

computational biology

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author name string

Fuchuan Li

1

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Chilkunda D Nandini

2

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Tomohide Hattori

3

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Xingfeng Bao

4

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Daisuke Murayama

5

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Toshikazu Nakamura

6

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Nobuhiro Fukushima

7

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Kazuyuki Sugahara

8

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Europe PubMed Central

PMC publication ID

13 October 2017

language of work or name

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publication date

28 June 2010

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Europe PubMed Central

PMC publication ID

13 October 2017

Journal of Biological Chemistry

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Europe PubMed Central

PMC publication ID

13 October 2017

285

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

36

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

27673-27685

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

CHARMM: the biomolecular simulation program

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2934635

20 June 2018

The binding properties of minimal oligosaccharides reveal a common heparan sulfate/dermatan sulfate-binding site in hepatocyte growth factor/scatter factor that can accommodate a wide variety of sulfation patterns

1 reference

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20 June 2018

Involvement of highly sulfated chondroitin sulfate in the metastasis of the Lewis lung carcinoma cells

1 reference

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20 June 2018

Hepatocyte growth factor and Met in tumor biology and therapeutic approach with NK4.

1 reference

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20 June 2018

Chondroitin/dermatan sulfate in the central nervous system

1 reference

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20 June 2018

Two related but distinct chondroitin sulfate mimetope octasaccharide sequences recognized by monoclonal antibody WF6.

1 reference

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20 June 2018

Structural determination of novel sulfated octasaccharides isolated from chondroitin sulfate of shark cartilage and their application for characterizing monoclonal antibody epitopes

1 reference

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20 June 2018

Conformational studies on five octasaccharides isolated from chondroitin sulfate using NMR spectroscopy and molecular modeling

1 reference

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Statistical potential for assessment and prediction of protein structures

1 reference

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20 June 2018

Interactions between heparan sulfate and proteins: the concept of specificity

1 reference

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20 June 2018

Chondroitin sulfate/dermatan sulfate hybrid chains in the development of cerebellum. Spatiotemporal regulation of the expression of critical disulfated disaccharides by specific sulfotransferases

1 reference

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20 June 2018

Demonstration of the pleiotrophin-binding oligosaccharide sequences isolated from chondroitin sulfate/dermatan sulfate hybrid chains of embryonic pig brains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2934635

20 June 2018

Heparin-binding growth factor, pleiotrophin, mediates neuritogenic activity of embryonic pig brain-derived chondroitin sulfate/dermatan sulfate hybrid chains

1 reference

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20 June 2018

Novel 70-kDa chondroitin sulfate/dermatan sulfate hybrid chains with a unique heterogeneous sulfation pattern from shark skin, which exhibit neuritogenic activity and binding activities for growth factors and neurotrophic factors

1 reference

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20 June 2018

Structural and functional characterization of oversulfated chondroitin sulfate/dermatan sulfate hybrid chains from the notochord of hagfish. Neuritogenic and binding activities for growth factors and neurotrophic factors

1 reference

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20 June 2018

Chondroitin sulfate/dermatan sulfate hybrid chains from embryonic pig brain, which contain a higher proportion of L-iduronic acid than those from adult pig brain, exhibit neuritogenic and growth factor binding activities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2934635

20 June 2018

Recent advances in the structural biology of chondroitin sulfate and dermatan sulfate

1 reference

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20 June 2018

Heterogeneity of the chondroitin sulfate portion of phosphacan/6B4 proteoglycan regulates its binding affinity for pleiotrophin/heparin binding growth-associated molecule.

1 reference

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20 June 2018

Biosynthesis of chondroitin/dermatan sulfate

1 reference

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20 June 2018

Dermatan sulfate: new functions from an old glycosaminoglycan

1 reference

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20 June 2018

Midkine and pleiotrophin: two related proteins involved in development, survival, inflammation and tumorigenesis

1 reference

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20 June 2018

Oversulfated chondroitin/dermatan sulfates containing GlcAbeta1/IdoAalpha1-3GalNAc(4,6-O-disulfate) interact with L- and P-selectin and chemokines

1 reference

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Modeling of loops in protein structures

1 reference

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Comparative protein structure modeling of genes and genomes

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Interaction of soluble and surface-bound heparin binding growth-associated molecule with heparin

1 reference

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Differential regulation of hepatocyte growth factor/scatter factor by cell surface proteoglycans and free glycosaminoglycan chains

1 reference

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20 June 2018

Hepatocyte growth factor, a versatile signal for developing neurons

1 reference

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Generalized Gradient Approximation Made Simple

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20 June 2018

Characteristic hexasaccharide sequences in octasaccharides derived from shark cartilage chondroitin sulfate D with a neurite outgrowth promoting activity.

1 reference

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Solution structure of midkine, a new heparin-binding growth factor

1 reference

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Neurite outgrowth in brain neurons induced by heparin-binding growth-associated molecule (HB-GAM) depends on the specific interaction of HB-GAM with heparan sulfate at the cell surface

1 reference

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Comparative protein modelling by satisfaction of spatial restraints

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Patterns of uronosyl epimerization and 4-/6-O-sulphation in chondroitin/dermatan sulphate from decorin and biglycan of various bovine tissues

1 reference

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20 June 2018

Isolation of a neural chondroitin sulfate proteoglycan with neurite outgrowth promoting properties

1 reference

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Purification and properties of bacterial chondroitinases and chondrosulfatases

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Enzymatic methods for the determination of small quantities of isomeric chondroitin sulfates

1 reference

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Immunocytochemical localization of tubulin and microtubule-associated protein 2 during the development of hippocampal neurons in culture.

1 reference

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1 reference

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Molecular cloning and expression of human hepatocyte growth factor

1 reference

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Structure of a dermatan sulfate hexasaccharide that binds to heparin cofactor II with high affinity

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A comparative study between a chondroitinase B and a chondroitinase AC from Flavobacterium heparinum: Isolation of a chondroitinase AC-susceptible dodecasaccharide from chondroitin sulphate B

1 reference

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Chondroitin sulfate E promotes neurite outgrowth of rat embryonic day 18 hippocampal neurons.

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Oversulfated dermatan sulfate exhibits neurite outgrowth-promoting activity toward embryonic mouse hippocampal neurons: implications of dermatan sulfate in neuritogenesis in the brain

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Functions of chondroitin sulfate/dermatan sulfate chains in brain development. Critical roles of E and iE disaccharide units recognized by a single chain antibody GD3G7.

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Neuritogenic activity of chondroitin/dermatan sulfate hybrid chains of embryonic pig brain and their mimicry from shark liver. Involvement of the pleiotrophin and hepatocyte growth factor signaling pathways

1 reference

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Chondroitin sulfate chains on syndecan-1 and syndecan-4 from normal murine mammary gland epithelial cells are structurally and functionally distinct and cooperate with heparan sulfate chains to bind growth factors. A novel function to control bindin

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Interactions of hepatocyte growth factor/scatter factor with various glycosaminoglycans reveal an important interplay between the presence of iduronate and sulfate density.

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The two thrombospondin type I repeat domains of the heparin-binding growth-associated molecule bind to heparin/heparan sulfate and regulate neurite extension and plasticity in hippocampal neurons

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1 reference

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12 December 2020

based on heuristic

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A modified uronic acid carbazole reaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/20584902

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural studies on the hexasaccharide alditols isolated from the carbohydrate-protein linkage region of dermatan sulfate proteoglycans of bovine aorta. Demonstration of iduronic acid-containing components

1 reference

https://pubmed.ncbi.nlm.nih.gov/20584902

12 December 2020

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Monoclonal antibodies specific for glial fibrillary acidic (GFA) protein and for each of the neurofilament triplet polypeptides

1 reference

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Identifiers

10.1074/JBC.M110.118703

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

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