(Q30406724)

6 September 2017

Allosteric communication in cysteinyl tRNA synthetase: a network of direct and indirect readout (English)

1 reference

6 September 2017

5

1 reference

6 September 2017

Saraswathi Vishveshwara

4

0 references

author name string

Amit Ghosh

1

1 reference

6 September 2017

Reiko Sakaguchi

2

1 reference

6 September 2017

Cuiping Liu

3

1 reference

6 September 2017

language of work or name

English

0 references

publication date

2 September 2011

1 reference

Journal of Biological Chemistry

6 September 2017

1 reference

6 September 2017

286

1 reference

6 September 2017

43

1 reference

6 September 2017

37721-37731

1 reference

Perturbation-response scanning reveals ligand entry-exit mechanisms of ferric binding protein

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Allostery and conformational free energy changes in human tryptophanyl-tRNA synthetase from essential dynamics and structure networks.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Ligand dependent intra and inter subunit communication in human tryptophanyl tRNA synthetase as deduced from the dynamics of structure networks.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

The origin of allosteric functional modulation: multiple pre-existing pathways

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Dynamical networks in tRNA:protein complexes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Variations in clique and community patterns in protein structures during allosteric communication: investigation of dynamically equilibrated structures of methionyl tRNA synthetase complexes.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Signaling pathways of PDZ2 domain: a molecular dynamics interaction correlation analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Predicting allosteric communication in myosin via a pathway of conserved residues

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Signal propagation in proteins and relation to equilibrium fluctuations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Allosteric transitions in the chaperonin GroEL are captured by a dominant normal mode that is most robust to sequence variations.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Modular architecture of protein structures and allosteric communications: potential implications for signaling proteins and regulatory linkages

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Kinetic quality control of anticodon recognition by a eukaryotic aminoacyl-tRNA synthetase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Dynamics of lysozyme structure network: probing the process of unfolding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

A network representation of protein structures: implications for protein stability.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Uncovering the overlapping community structure of complex networks in nature and society

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Is allostery an intrinsic property of all dynamic proteins?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Use of analogues of methionine and methionyl adenylate to sample conformational changes during catalysis in Escherichia coli methionyl-tRNA synthetase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Evidence for breaking domain-domain functional communication in a synthetase-tRNA complex

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Evolutionarily conserved pathways of energetic connectivity in protein families

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Identification of side-chain clusters in protein structures by a graph spectral method.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

VMD: visual molecular dynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Essential dynamics of proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

An operational RNA code for amino acids and possible relationship to genetic code

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Comparison of Experimental Binding Data and Theoretical Models in Proteins Containing Subunits*

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Sequence determination and modeling of structural motifs for the smallest monomeric aminoacyl-tRNA synthetase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Structural basis of anticodon loop recognition by glutaminyl-tRNA synthetase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3199515

Recognition of tRNA(Cys) by Escherichia coli cysteinyl-tRNA synthetase

20 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.246702

Aminoacylation of tRNA with phosphoserine for synthesis of cysteinyl-tRNA(Cys).

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.246702

Shape-selective RNA recognition by cysteinyl-tRNA synthetase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.246702

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.246702

Alternative design of a tRNA core for aminoacylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.246702

Zinc-mediated amino acid discrimination in cysteinyl-tRNA synthetase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.246702

Amino acid discrimination by a highly differentiated metal center of an aminoacyl-tRNA synthetase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.246702

The use of double mutants to detect structural changes in the active site of the tyrosyl-tRNA synthetase (Bacillus stearothermophilus)

21 January 2018

1 reference

12 December 2020

Specific sequence homology and three-dimensional structure of an aminoacyl transfer RNA synthetase

1 reference

12 December 2020

A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat

1 reference

12 December 2020

CFinder: locating cliques and overlapping modules in biological networks

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M111.246702

1 reference

6 September 2017

1 reference

6 September 2017

1 reference