(Q30417873)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689641%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

title

PredyFlexy: flexibility and local structure prediction from sequence (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689641%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

author

Alexandre G de Brevern

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689641%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

Catherine Etchebest

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689641%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

Jean-Christophe Gelly

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689641%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

author name string

Aurélie Bornot

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689641%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

Pierrick Craveur

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689641%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

language of work or name

English

0 references

publication date

11 June 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689641%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689641%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

volume

40

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689641%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

page(s)

W317-22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689641%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

issue

Web Server issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689641%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 3.0 Unported

4 February 2020

copyright license

start time

5 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Flexibility, diversity, and cooperativity: pillars of enzyme catalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

A short survey on protein blocks.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Efficient incorporation of protein flexibility and dynamics into molecular docking simulations

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

A machine learning approach for the prediction of protein surface loop flexibility

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Predicting protein flexibility through the prediction of local structures

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Ongoing and future developments at the Universal Protein Resource

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Accommodating protein flexibility for structure-based drug design

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Fluctuations of backbone torsion angles obtained from NMR-determined structures and their prediction

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Prediction of protein motions from amino acid sequence and its application to protein-protein interaction

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Regulating transcription regulators via allostery and flexibility

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

CHARMM: the biomolecular simulation program

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

A new prediction strategy for long local protein structures using an original description

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

FlexPred: a web-server for predicting residue positions involved in conformational switches in proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

StoneHinge: hinge prediction by network analysis of individual protein structures

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Analyzing the sequence-structure relationship of a library of local structural prototypes.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Protein conformational flexibility prediction using machine learning

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Ordered conformational change in the protein backbone: prediction of conformationally variable positions from sequence and low-resolution structural data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

HingeProt: automated prediction of hinges in protein structures

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Prediction of flexible/rigid regions from protein sequences using k-spaced amino acid pairs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Assessing a novel approach for predicting local 3D protein structures from sequence.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Scalable molecular dynamics with NAMD

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

The Amber biomolecular simulation programs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Exploiting heterogeneous sequence properties improves prediction of protein disorder.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Improved amino acid flexibility parameters

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

'Hybrid protein model' for optimally defining 3D protein structure fragments.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) in 2003.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB)

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394303

FlexServ: an integrated tool for the analysis of protein flexibility.

14 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS482

Robust prediction of B-factor profile from sequence using two-stage SVR based on random forest feature selection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS482

FoldUnfold: web server for the prediction of disordered regions in protein chain.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS482

Flexibility and mobility in mesophilic and thermophilic homologous proteins from molecular dynamics and FoldUnfold method.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS482

Self-Organized Formation of Topologically Correct Feature Maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS482

The role of Trp-82 in the folding of intestinal fatty acid binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS482

GROMACS 3.0: a package for molecular simulation and trajectory analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS482

Accuracy of protein flexibility predictions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS482

tCONCOORD-GUI: visually supported conformational sampling of bioactive molecules

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22689641

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

PROFbval: predict flexible and rigid residues in proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22689641

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKS482

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689641%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/BrevernBCEG12

4 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689641%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22689641%20AND%20SRC:MED&resulttype=core&format=json