(Q30419850)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22848494%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

title

Mapping the mutual information network of enzymatic families in the protein structure to unveil functional features (English)

1 reference

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9 February 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22848494%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

Cristina Marino-Buslje

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22848494%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

author name string

Baldo Oliva

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22848494%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

language of work or name

English

0 references

publication date

25 July 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22848494%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22848494%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22848494%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

issue

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22848494%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

page(s)

e41430

1 reference

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Creative Commons Attribution 4.0 International

9 February 2020

copyright license

start time

25 July 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Using amino acid correlation and community detection algorithms to identify functional determinants in protein families

1 reference

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Accurate protein structure annotation through competitive diffusion of enzymatic functions over a network of local evolutionary similarities

20 June 2018

1 reference

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Networks of high mutual information define the structural proximity of catalytic sites: implications for catalytic residue identification.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3405127

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3405127

Structural and functional roles of coevolved sites in proteins

20 June 2018

1 reference

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Estimating sufficient statistics in co-evolutionary analysis by mutual information

20 June 2018

1 reference

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The Universal Protein Resource (UniProt) in 2010

20 June 2018

1 reference

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Protein sectors: evolutionary units of three-dimensional structure

20 June 2018

1 reference

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Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3405127

Coevolution in defining the functional specificity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3405127

Analysis of the residue-residue coevolution network and the functionally important residues in proteins.

20 June 2018

1 reference

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The Pfam protein families database

20 June 2018

1 reference

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Detecting coevolution in and among protein domains

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3405127

Features of protein-protein interactions in two-component signaling deduced from genomic libraries

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3405127

Modular architecture of protein structures and allosteric communications: potential implications for signaling proteins and regulatory linkages

20 June 2018

1 reference

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Networks for the allosteric control of protein kinases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3405127

Statistical mechanics of community detection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3405127

Residues crucial for maintaining short paths in network communication mediate signaling in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3405127

Evolutionary information for specifying a protein fold

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3405127

Small-world communication of residues and significance for protein dynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3405127

The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data

20 June 2018

1 reference

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Uncovering network systems within protein structures.

20 June 2018

1 reference

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The large-scale organization of metabolic networks

20 June 2018

1 reference

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Classes of small-world networks

20 June 2018

1 reference

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Evolutionarily conserved pathways of energetic connectivity in protein families

20 June 2018

1 reference

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Collective dynamics of 'small-world' networks

20 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3405127

20 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0041430

Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0041430

Contact prediction using mutual information and neural nets

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0041430

The small world inside large metabolic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0041430

Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0041430

Insights into correlated motions and long-range interactions in CheY derived from molecular dynamics simulations

21 January 2018

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Analysis of catalytic residues in enzyme active sites

21 January 2018

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Network Analysis Tools: from biological networks to clusters and pathways.

21 January 2018

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Relating sequence evolution of HIV1-protease to its underlying molecular mechanics

21 January 2018

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Network Analysis of Protein Structures Identifies Functional Residues

21 January 2018

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Small-world view of the amino acids that play a key role in protein folding.

21 January 2018

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10.1371/JOURNAL.PONE.0041430

26 November 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22848494%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22848494%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

PubMed publication ID

22848494

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22848494%20AND%20SRC:MED&resulttype=core&format=json