(Q30426895)

21 June 2017

A new method for modeling large-scale rearrangements of protein domains (English)

1 reference

21 June 2017

Maiorov V

1

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21 June 2017

Abagyan R

series ordinal

2

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21 June 2017

language of work or name

English

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publication date

1 March 1997

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21 June 2017

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21 June 2017

27

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21 June 2017

410-424

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21 June 2017

3

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Flexibility and rigidity, requirements for the function of proteins and protein pigment complexes. Eleventh Keilin memorial lecture.

21 June 2017

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Structural mechanisms for domain movements in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

The Protein Data Bank: a computer-based archival file for macromolecular structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

A mutant T4 lysozyme displays five different crystal conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Structural comparison suggests that thermolysin and related neutral proteases undergo hinge-bending motion during catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Domain flexibility in aspartic proteinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Atomic structures of periplasmic binding proteins and the high-affinity active transport systems in bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Crystal structure of hemoprotein domain of P450BM-3, a prototype for microsomal P450's

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Movie of the structural changes during a catalytic cycle of nucleoside monophosphate kinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Domain closure in lactoferrin. Two hinges produce a see-saw motion between alternative close-packed interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Automatic analysis of protein conformational changes by multiple linkage clustering.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

A molecular dynamics simulation of bacteriophage T4 lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Dramatic differences in the motions of the mouth of open and closed cytochrome P450BM-3 by molecular dynamics simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Structural dynamics of calmodulin and troponin C.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Study of global motions in proteins by weighted masses molecular dynamics: adenylate kinase as a test case.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Langevin modes of macromolecules: applications to crambin and DNA hexamers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

New methodology for computer-aided modelling of biomolecular structure and dynamics. 1. Non-cyclic structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Investigation of conformational equilibrium of polypeptides by internal coordinate stochastic dynamics. Met5-enkephalin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Protein simulations using techniques suitable for very large systems: the cell multipole method for nonbond interactions and the Newton-Euler inverse mass operator method for internal coordinate dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Virtual rigid body dynamics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Efficient Monte Carlo method for simulation of fluctuating conformations of native proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Essential dynamics of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

ICM?A new method for protein modeling and design: Applications to docking and structure prediction from the distorted native conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

The crystal structure of an engineered monomeric triosephosphate isomerase, monoTIM: the correct modelling of an eight-residue loop.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Detailed ab initio prediction of lysozyme-antibody complex with 1.6 A accuracy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Homology modeling by the ICM method

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Atomic solvation parameters applied to molecular dynamics of proteins in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Monte Carlo-minimization approach to the multiple-minima problem in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Equation of State Calculations by Fast Computing Machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Empirical solvation models in the context of conformational energy searches: application to bovine pancreatic trypsin inhibitor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Model for the complex between protein G and an antibody Fc fragment in solution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Optimal protocol and trajectory visualization for conformational searches of peptides and proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

The interpretation of protein structures: Estimation of static accessibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

The tree structural organization of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Location of domains in globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Location of structural domains in protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Folding units in globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Compact units in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Parser for protein folding units

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

A procedure for detecting structural domains in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Identification and analysis of domains in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Continuous and discontinuous domains: an algorithm for the automatic generation of reliable protein domain definitions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

New methodology for computer-aided modelling of biomolecular structure and dynamics. 2. Local deformations and cycles

21 January 2018

1 reference

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Tracking conformational states in allosteric transitions of phosphorylase

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Structural domains in proteins and their role in the dynamics of protein function

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Simulation of enzyme–substrate encounter with gated active sites

21 January 2018

1 reference

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The hinge-bending mode in lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Structure of a second crystal form of Bence-Jones protein Loc: strikingly different domain associations in two crystal forms of a single protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Structure of a hinge-bending bacteriophage T4 lysozyme mutant, Ile3-->Pro

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Domain closure in adenylate kinase. Joints on either side of two helices close like neighboring fingers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Mechanisms of domain closure in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Investigation of domain motions in bacteriophage T4 lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

DNA binding by TATA-box binding protein (TBP): a molecular dynamics computational study

21 January 2018

1 reference

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Functional role of arginine-11 in the N-terminal helix of skeletal troponin C: combined mutagenesis and molecular dynamics investigation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

A method to configure protein side-chains from the main-chain trace in homology modelling

21 January 2018

1 reference

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Recognition of distantly related proteins through energy calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Monte Carlo minimization with thermalization for global optimization of polypeptide conformations in cartesian coordinate space

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Novel arrangement of immunoglobulin variable domains: X-ray crystallographic analysis of the lambda-chain dimer Bence-Jones protein Loc

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

Conformational sampling using high-temperature molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%28199703%2927%3A3%3C410%3A%3AAID-PROT9%3E3.0.CO%3B2-G

10.1002/(SICI)1097-0134(199703)27:3<410::AID-PROT9>3.0.CO;2-G

21 January 2018

Identifiers

DOI

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release_w77ito7mvzgdjp2i5uyedr3k7u

21 June 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/w77ito7mvzgdjp2i5uyedr3k7u

mapped directly with Wikidata item

24 November 2022

based on heuristic

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