(Q30427327)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

title

Non-optimal codon usage affects expression, structure and function of clock protein FRQ (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

elongation factor 1 alpha

24 February 2020

main subject

40S ribosomal protein S4

0 references

transaldolase

0 references

superoxide dismutase

0 references

0 references

40S ribosomal protein S9

0 references

pyruvate carboxylase

0 references

bifunctional purine biosynthesis protein

0 references

0 references

60S ribosomal protein L9

0 references

hypothetical protein, variant 2

0 references

hypothetical protein, variant 1

0 references

6-phosphogluconate dehydrogenase

0 references

0 references

40S ribosomal protein S11

0 references

nascent polypeptide-associated complex beta subunit

0 references

60S ribosomal protein L36

0 references

60S ribosomal protein L20

0 references

60S ribosomal protein L20, variant 1

0 references

ADP-ribosylation factor 1

0 references

ADP-ribosylation factor 1, variant 1

0 references

enolase

0 references

enolase, variant 1

0 references

60S acidic ribosomal protein P2

0 references

zinc finger white collar protein WC2

0 references

peptidyl-prolyl cis-trans isomerase

0 references

Ribosomal protein L14

0 references

60S ribosomal protein L23

0 references

14-3-3 family protein 7

0 references

pentose glucuronate interconversion-2

0 references

RNA binding protein

0 references

GTP-binding nuclear protein GSP1/Ran

0 references

GTP-binding nuclear protein GSP1/Ran, variant 1

0 references

40S ribosomal protein S16

0 references

ribosomal protein CRP7

0 references

ribosomal protein CRP7, variant 1

0 references

heat shock protein 70

0 references

Ribosomal protein L26

0 references

acetate utilization-19

0 references

acetate utilization-19

0 references

60S ribosomal protein L27

0 references

cytochrome c

0 references

glyceraldehyde 3-phosphate-dehydrogenase

0 references

thiamine biosynthesis protein NMT-1

0 references

40S ribosomal protein S5

0 references

40S ribosomal protein S19

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40S ribosomal protein S14

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40S ribosomal protein S22

0 references

40S ribosomal protein S22, variant 1

0 references

60S ribosomal protein L25

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methionine synthase

0 references

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ARD/ARD family protein

0 references

60S ribosomal protein L10a

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Ras superfamily GTPase

0 references

60S ribosomal protein L2

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60S ribosomal protein L32

0 references

40S ribosomal protein S18

0 references

cytoplasmic ribosomal protein 10

0 references

elongation factor 3

0 references

Phosphoglycerate kinase

0 references

pyridoxine 1

0 references

translation elongation factor aEF-2

0 references

0 references

0 references

0 references

0 references

0 references

0 references

fatty acid synthase alpha subunit reductase

0 references

fatty acid synthase alpha subunit reductase, variant 1

0 references

fatty acid synthase beta subunit dehydratase, variant 1

0 references

fatty acid synthase beta subunit dehydratase

0 references

glucose-6-phosphate isomerase

0 references

0 references

bli-3

0 references

40S ribosomal protein S17

0 references

glycogen phosphorylase-1

0 references

Orotate phosphoribosyltransferase

0 references

sulfite reductase beta subunit

0 references

Fructose-bisphosphate aldolase

0 references

fructose-bisphosphate aldolase, variant 1

0 references

Ketol-acid reductoisomerase

0 references

60S ribosomal protein L4-A

0 references

ribosomal protein L27a.e

0 references

elongation factor 1-gamma

0 references

Glu/Leu/Phe/Val dehydrogenase

0 references

tropomyosin, variant 1

0 references

tropomyosin

0 references

60S ribosomal protein L22

0 references

40S ribosomal protein S1

0 references

calmodulin A

0 references

peptidyl-prolyl cis-trans isomerase fkr-2

0 references

heat shock protein 80

0 references

actin

0 references

actin, variant 1

0 references

60S ribosomal protein L5

0 references

60S ribosomal protein L30

0 references

40S ribosomal protein S24

0 references

60S ribosomal protein L8

0 references

40S ribosomal protein S28

0 references

0 references

60S ribosomal protein L13

0 references

60S ribosomal protein L18

0 references

RNA-binding protein Vip1

0 references

0 references

zinc-containing alcohol dehydrogenase

0 references

thiazole biosynthetic enzyme, variant 2

0 references

thiazole biosynthetic enzyme, variant 1

0 references

thiazole biosynthetic enzyme

0 references

thiazole biosynthetic enzyme, variant 3

0 references

Pyruvate kinase

0 references

pyruvate kinase, variant 1

0 references

40S ribosomal protein S2

0 references

mitochondrial peroxiredoxin PRX1

0 references

white collar 1 protein, variant 2

0 references

white collar 1 protein, variant 1

0 references

white collar 1 protein

0 references

white collar 1 protein, variant 3

0 references

Serine hydroxymethyltransferase

0 references

period clock protein FRQ

0 references

period clock protein FRQ, variant 2

0 references

period clock protein FRQ, variant 1

0 references

Phosphoglycerate mutase

0 references

Pyruvate decarboxylase

0 references

pyruvate decarboxylase, variant 1

0 references

60S ribosomal protein L19

0 references

author

Michael S Chae

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Matthew S. Sachs

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

author name string

Mian Zhou

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Jinhu Guo

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Joonseok Cha

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

She Chen

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Jose M Barral

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Yi Liu

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

language of work or name

English

0 references

publication date

17 February 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

volume

495

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

issue

7439

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

page(s)

111-115

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

The circadian clock of Neurospora crassa

24 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

The cyanobacterial circadian system: from biophysics to bioevolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Regulation of the activity and cellular localization of the circadian clock protein FRQ.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Synonymous but not the same: the causes and consequences of codon bias

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

A role for codon order in translation dynamics.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

An evolutionarily conserved mechanism for controlling the efficiency of protein translation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Slowing bacterial translation speed enhances eukaryotic protein folding efficiency

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

The exosome regulates circadian gene expression in a posttranscriptional negative feedback loop

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Setting the pace of the Neurospora circadian clock by multiple independent FRQ phosphorylation events

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Quantitative proteomics reveals a dynamic interactome and phase-specific phosphorylation in the Neurospora circadian clock

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Translationally optimal codons associate with structurally sensitive sites in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Long and short isoforms of Neurospora clock protein FRQ support temperature-compensated circadian rhythms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Fully codon-optimized luciferase uncovers novel temperature characteristics of the Neurospora clock

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

The Neurospora crassa circadian clock

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

A double-stranded-RNA response program important for RNA interference efficiency

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

A "silent" polymorphism in the MDR1 gene changes substrate specificity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Molecular mechanism of suppression of circadian rhythms by a critical stimulus

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

CKI and CKII mediate the FREQUENCY-dependent phosphorylation of the WHITE COLLAR complex to close the Neurospora circadian negative feedback loop

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Temperature-modulated alternative splicing and promoter use in the Circadian clock gene frequency

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Regulation of the Neurospora circadian clock by an RNA helicase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Interlocked feedback loops contribute to the robustness of the Neurospora circadian clock

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Coiled-coil domain-mediated FRQ-FRQ interaction is essential for its circadian clock function in Neurospora

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Interconnected feedback loops in the Neurospora circadian system

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

How temperature changes reset a circadian oscillator

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Thermally regulated translational control of FRQ mediates aspects of temperature responses in the neurospora circadian clock

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Alternative initiation of translation and time-specific phosphorylation yield multiple forms of the essential clock protein FREQUENCY.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Distinct cis-acting elements mediate clock, light, and developmental regulation of the Neurospora crassa eas (ccg-2) gene

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Negative feedback defining a circadian clock: autoregulation of the clock gene frequency

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Light-induced resetting of a circadian clock is mediated by a rapid increase in frequency transcript

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

20 June 2018

Codon selection in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Codon usage and tRNA content in unicellular and multicellular organisms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

The 'effective number of codons' used in a gene

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3629845

Circadian and light-induced expression of luciferase in Neurospora crassa

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE11833

Silent substitutions predictably alter translation elongation rates and protein folding efficiencies

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE11833

Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23417067

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Transcriptional feedback of Neurospora circadian clock gene by phosphorylation-dependent inactivation of its transcription factor

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23417067

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Non-optimal codon usage is a mechanism to achieve circadian clock conditionality.

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE11833

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NATURE11833

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

24 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

PubMed publication ID

23417067

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23417067%20AND%20SRC:MED&resulttype=core&format=json