(Q30429496)

14 September 2017

DomHR: accurately identifying domain boundaries in proteins using a hinge region strategy (English)

1 reference

14 September 2017

Xiao-yan Zhang

1

1 reference

14 September 2017

Long-jian Lu

2

1 reference

14 September 2017

Qi Song

3

1 reference

14 September 2017

Qian-qian Yang

4

1 reference

14 September 2017

Da-peng Li

5

1 reference

14 September 2017

Jiang-ming Sun

6

1 reference

14 September 2017

Tong-hua Li

7

1 reference

14 September 2017

Pei-sheng Cong

8

1 reference

14 September 2017

language of work or name

English

0 references

publication date

11 April 2013

1 reference

14 September 2017

1 reference

14 September 2017

8

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14 September 2017

4

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14 September 2017

e60559

1 reference

Creative Commons Attribution 4.0 International

14 September 2017

start time

11 April 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Prediction of protein domain with mRMR feature selection and analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

DSP: a protein shape string and its profile prediction server

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

SPINE-D: accurate prediction of short and long disordered regions by a single neural-network based method

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Improving the performance of β-turn prediction using predicted shape strings and a two-layer support vector machine model

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Using predicted shape string to enhance the accuracy of γ-turn prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Protein domain assignment from the recurrence of locally similar structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

DomSVR: domain boundary prediction with support vector regression from sequence information alone

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Ab initio and homology based prediction of protein domains by recursive neural networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Improved general regression network for protein domain boundary prediction.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

AAindex: amino acid index database, progress report 2008

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

DOMAC: an accurate, hybrid protein domain prediction server.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Improving the performance of DomainDiscovery of protein domain boundary assignment using inter-domain linker index

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

CDD: a conserved domain database for interactive domain family analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Protein structure prediction servers at University College London

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Armadillo: domain boundary prediction by amino acid composition.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Proteins and their shape strings. An exemplary computer representation of protein structure.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Sequence-based prediction of protein domains.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Arby: automatic protein structure prediction using profile-profile alignment and confidence measures.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Automated prediction of CASP-5 structures using the Robetta server.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

PISCES: a protein sequence culling server

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

DomCut: prediction of inter-domain linker regions in amino acid sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Rapid protein domain assignment from amino acid sequence using predicted secondary structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

SnapDRAGON: a method to delineate protein structural domains from sequence data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

InterProScan--an integration platform for the signature-recognition methods in InterPro

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Domain size distributions can predict domain boundaries

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

SCOP: a structural classification of proteins database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

20 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

CATH--a hierarchic classification of protein domain structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

Nucleation, rapid folding, and globular intrachain regions in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623903

DROP: an SVM domain linker predictor trained with optimal features selected by random forest

20 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0060559

Exhaustive enumeration of protein domain families

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0060559

SSEP-Domain: protein domain prediction by alignment of secondary structure elements and profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0060559

Prediction of protein domain boundaries from sequence alone

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0060559

Automatic prediction of protein domains from sequence information using a hybrid learning system

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0060559

Sequence-based protein domain boundary prediction using BP neural network with various property profiles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0060559

Real-SPINE: an integrated system of neural networks for real-value prediction of protein structural properties.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0060559

A novel structural position-specific scoring matrix for the prediction of protein secondary structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0060559

Domain definition and target classification for CASP6

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0060559

PPRODO: Prediction of protein domain boundaries using neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0060559

10.1371/JOURNAL.PONE.0060559

21 January 2018

Identifiers

DOI

1 reference

14 September 2017

0 references

1 reference

14 September 2017

PubMed publication ID

23593247

1 reference