(Q30437066)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

title

Whole genome resequencing in tomato reveals variation associated with introgression and breeding events (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

main subject

whole genome sequencing

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

author name string

Nelly Desplat

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Laura Pascual

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Marie-Christine Le Paslier

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Christopher Sauvage

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Guillaume Bauchet

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Aurélie Bérard

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Rémi Bounon

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Maria Tchoumakov

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Dominique Brunel

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Jean-Paul Bouchet

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

language of work or name

English

0 references

publication date

14 November 2013

1 reference

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29 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

volume

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

page(s)

791

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1186/1471-2164-14-791

29 February 2020

exact match

0 references

cites work

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Variation revealed by SNP genotyping and morphology provides insight into the origin of the tomato

14 July 2018

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Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents

14 July 2018

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High-density SNP genotyping of tomato (Solanum lycopersicum L.) reveals patterns of genetic variation due to breeding.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

Genome-wide association mapping in tomato (Solanum lycopersicum) is possible using genome admixture of Solanum lycopersicum var. cerasiforme

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

Development of a large SNP genotyping array and generation of high-density genetic maps in tomato

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3

14 July 2018

1 reference

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Comparative population genomics of maize domestication and improvement

14 July 2018

1 reference

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The tomato genome sequence provides insights into fleshy fruit evolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

14 July 2018

1 reference

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cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate

14 July 2018

1 reference

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VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

14 July 2018

1 reference

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Multiple reference genomes and transcriptomes for Arabidopsis thaliana

14 July 2018

1 reference

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Sequencing crop genomes: approaches and applications

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

SNP discovery and linkage map construction in cultivated tomato.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

Genome-wide patterns of genetic variation among elite maize inbred lines

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

An interspecific linkage map of SSR and intronic polymorphism markers in tomato

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

Sequence diversity in three tomato species: SNPs, markers, and molecular evolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

The Sequence Alignment/Map format and SAMtools

14 July 2018

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Fast and accurate short read alignment with Burrows-Wheeler transform

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

EST, COSII, and arbitrary gene markers give similar estimates of nucleotide diversity in cultivated tomato (Solanum lycopersicum L.).

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

A clarified position for Solanum lycopersicum var. cerasiforme in the evolutionary history of tomatoes (solanaceae).

14 July 2018

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14 July 2018

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From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants.

14 July 2018

1 reference

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Diversity in conserved genes in tomato

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

Use of isogenic lines and simultaneous probing to identify DNA markers tightly linked to the tm-2a gene in tomato.

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

Expressed sequence tags from the laboratory-grown miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom and mining for single nucleotide polymorphisms and insertions/deletions in tomato cultivars

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

Unused natural variation can lift yield barriers in plant breeding

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

High density molecular linkage maps of the tomato and potato genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

fw2.2: a quantitative trait locus key to the evolution of tomato fruit size

14 July 2018

1 reference

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Evaluation of AFLPs for germplasm fingerprinting and assessment of genetic diversity in cultivars of tomato (Lycopersicon esculentum L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-791

A gene expression signature shared by human mature oocytes and embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-791

Phenotypic diversity and association mapping for fruit quality traits in cultivated tomato and related species

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-791

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046683

QTL analysis of fruit quality in fresh market tomato: a few chromosome regions control the variation of sensory and instrumental traits

26 November 2018

1 reference

12 December 2020

Improving plant breeding with exotic genetic libraries

1 reference

12 December 2020

Increase in tomato locule number is controlled by two single-nucleotide polymorphisms located near WUSCHEL

1 reference

12 December 2020

Preface: advances in DNA sequencing accelerating plant biotechnology

1 reference

12 December 2020

Genome-wide DNA polymorphisms in eliteindicarice inbreds discovered by whole-genome sequencing

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-14-791

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

29 February 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-14-791

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

PubMed publication ID

24228636

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24228636%20AND%20SRC:MED&resulttype=core&format=json