(Q30496093)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20643962%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

title

Systematic determination of order parameters for chain dynamics using diffusion maps (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20643962%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20643962%20AND%20SRC:MED&resulttype=core&format=json

Athanassios Z. Panagiotopoulos

8 February 2020

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20643962%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

author name string

Pablo G Debenedetti

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20643962%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

Ioannis G Kevrekidis

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20643962%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

language of work or name

English

0 references

publication date

19 July 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20643962%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

8 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20643962%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

volume

107

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20643962%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

page(s)

13597-13602

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20643962%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

issue

31

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20643962%20AND%20SRC:MED&resulttype=core&format=json

Detecting intrinsic slow variables in stochastic dynamical systems by anisotropic diffusion maps

8 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

Deconstructing the native state: energy landscapes, function, and dynamics of globular proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

Graph Laplacian tomography from unknown random projections

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

Solvent coarse-graining and the string method applied to the hydrophobic collapse of a hydrated chain

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

Calculation of the free energy and cooperativity of protein folding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

Effects of lengthscales and attractions on the collapse of hydrophobic polymers in water

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reduction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

P versus Q: structural reaction coordinates capture protein folding on smooth landscapes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

GROMACS: fast, flexible, and free

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

Interfaces and the driving force of hydrophobic assembly

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

Geometric diffusions as a tool for harmonic analysis and structure definition of data: diffusion maps.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

Reaction coordinates and rates from transition paths

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

PRODRG: a tool for high-throughput crystallography of protein-ligand complexes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

Some factors in the interpretation of protein denaturation

20 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

20 June 2018

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

Transition path sampling: throwing ropes over rough mountain passes, in the dark.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

Nonlinear dimensionality reduction by locally linear embedding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

Reaction coordinates of biomolecular isomerization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

Canonical dynamics: Equilibrium phase-space distributions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

VMD: visual molecular dynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

Essential dynamics of proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

Learning the hidden structure of speech.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922286

How complex is the dynamics of Peptide folding?

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

On the transition coordinate for protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

Structure of Met-enkephalin in explicit aqueous solution using replica exchange molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

A global geometric framework for nonlinear dimensionality reduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

Coarse-graining the dynamics of a driven interface in the presence of mobile impurities: effective description via diffusion maps.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

String method in collective variables: minimum free energy paths and isocommittor surfaces.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

Molecular dynamics simulations of end-to-end contact formation in hydrocarbon chains in water and aqueous urea solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

Conformation and solvation structure for an isolated n-octadecane chain in water, methanol, and their mixtures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

Size-independent comparison of protein three-dimensional structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

Measuring the strangeness of strange attractors

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

Shape of unperturbed linear polymers: polypropylene

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

Solubility and molecular conformations of n-alkane chains in water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

Coarse molecular dynamics of a peptide fragment: Free energy, kinetics, and long-time dynamics computations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

Hydrophobic Effects on a Molecular Scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003293107

Hydrophobic free energy, micelle formation and the association of proteins with amphiphiles

21 January 2018

1 reference

12 December 2020

Self-Organization ofn-Alkane Chains in Water: Length Dependent Crossover from Helix and Toroid to Molten Globule

1 reference

12 December 2020

Fast and reliable analysis of molecular motion using proximity relations and dimensionality reduction

1 reference

12 December 2020

Large-amplitude nonlinear motions in proteins

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1003293107

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20643962%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

0 references

release_7hvemx77vnhmdmb5ycvboztmha

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/7hvemx77vnhmdmb5ycvboztmha

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20643962%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

1 reference