Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q30524873)
Watch
English
Hybridization-based reconstruction of small non-coding RNA transcripts from deep sequencing data.
scientific article
In more languages
default for all languages
No label defined
No description defined
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
3439898
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22705792%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
title
Hybridization-based reconstruction of small non-coding RNA transcripts from deep sequencing data
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
3439898
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22705792%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
main subject
non-coding RNA
0 references
author
Denis C Bauer
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
3439898
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22705792%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
author name string
Chikako Ragan
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3439898
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22705792%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
Bryan J Mowry
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3439898
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22705792%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
language of work or name
English
0 references
publication date
16 June 2012
1 reference
stated in
Europe PubMed Central
PMC publication ID
3439898
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22705792%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
number of pages
11
1 reference
based on heuristic
inferred from page(s)
published in
Nucleic Acids Research
1 reference
stated in
Europe PubMed Central
PMC publication ID
3439898
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22705792%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
volume
40
1 reference
stated in
Europe PubMed Central
PMC publication ID
3439898
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22705792%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
issue
16
1 reference
stated in
Europe PubMed Central
PMC publication ID
3439898
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22705792%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
page(s)
7633-7643
1 reference
stated in
Europe PubMed Central
PMC publication ID
3439898
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22705792%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
copyright license
Creative Commons Attribution-NonCommercial 3.0 Unported
start time
4 October 2016
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
Evolution of microRNA diversity and regulation in animals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
The human mitochondrial transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
The reality of pervasive transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
miRBase: integrating microRNA annotation and deep-sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
Classification of ncRNAs using position and size information in deep sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
The widespread regulation of microRNA biogenesis, function and decay
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
Regulation of microRNA expression and abundance during lymphopoiesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
mirTools: microRNA profiling and discovery based on high-throughput sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
DSAP: deep-sequencing small RNA analysis pipeline
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
BEDTools: a flexible suite of utilities for comparing genomic features
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
deepBase: a database for deeply annotating and mining deep sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
A global view of genomic information--moving beyond the gene and the master regulator
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
Identification and classification of small RNAs in transcriptome sequence data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
RNAz 2.0: improved noncoding RNA detection.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
Fast and accurate short read alignment with Burrows-Wheeler transform
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
Expression profiling of microRNAs by deep sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
Discovering microRNAs from deep sequencing data using miRDeep
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
Developmentally regulated piRNA clusters implicate MILI in transposon control
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
A novel class of small RNAs in mouse spermatogenic cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
A novel class of small RNAs bind to MILI protein in mouse testes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
A germline-specific class of small RNAs binds mammalian Piwi proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
Non-coding-RNA regulators of RNA polymerase II transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
Clusters of internally primed transcripts reveal novel long noncoding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
Memory efficient folding algorithms for circular RNA secondary structures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
14 July 2018
A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
26 November 2018
DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
26 November 2018
miRNAkey: a software for microRNA deep sequencing analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
26 November 2018
In silico sequence evolution with site-specific interactions along phylogenetic trees.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439898
retrieved
26 November 2018
Identifiers
DOI
10.1093/NAR/GKS505
1 reference
stated in
Europe PubMed Central
PMC publication ID
3439898
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22705792%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
PMC publication ID
3439898
1 reference
stated in
Europe PubMed Central
PMC publication ID
3439898
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22705792%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
PubMed publication ID
22705792
1 reference
stated in
Europe PubMed Central
PMC publication ID
3439898
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22705792%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
ResearchGate publication ID
227172037
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit