(Q30580191)

25 June 2017

title

A fast and accurate SNP detection algorithm for next-generation sequencing data (English)

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25 June 2017

Feng Xu

1

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25 June 2017

Weixin Wang

2

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25 June 2017

Panwen Wang

3

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25 June 2017

Mulin Jun Li

4

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25 June 2017

Pak Chung Sham

5

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25 June 2017

Junwen Wang

6

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25 June 2017

language of work or name

English

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publication date

1 January 2012

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25 June 2017

published in

Nature Communications

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25 June 2017

volume

3

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25 June 2017

page(s)

1258

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Predicting the effects of amino acid substitutions on protein function

25 June 2017

cites work

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS2256

SNP@Promoter: a database of human SNPs (single nucleotide polymorphisms) within the putative promoter regions

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dbSMR: a novel resource of genome-wide SNPs affecting microRNA mediated regulation

21 January 2018

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Initial sequencing and analysis of the human genome

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A second generation human haplotype map of over 3.1 million SNPs

21 January 2018

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A haplotype map of the human genome

21 January 2018

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Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing

21 January 2018

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

21 January 2018

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https://api.crossref.org/works/10.1038%2FNCOMMS2256

SNP detection for massively parallel whole-genome resequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS2256

SOAP: short oligonucleotide alignment program

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS2256

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors

21 January 2018

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The Sequence Alignment/Map format and SAMtools

21 January 2018

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https://api.crossref.org/works/10.1038%2FNCOMMS2256

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

21 January 2018

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https://api.crossref.org/works/10.1038%2FNCOMMS2256

High quality SNP calling using Illumina data at shallow coverage.

21 January 2018

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Comprehensive genomic characterization defines human glioblastoma genes and core pathways

21 January 2018

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A map of human genome variation from population-scale sequencing

21 January 2018

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Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

21 January 2018

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

21 January 2018

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https://api.crossref.org/works/10.1038%2FNCOMMS2256

Genotype and SNP calling from next-generation sequencing data

21 January 2018

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The 1000 Genomes Project: new opportunities for research and social challenges

21 January 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

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A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms

21 January 2018

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https://api.crossref.org/works/10.1038%2FNCOMMS2256

Neighboring-nucleotide effects on single nucleotide polymorphisms: a study of 2.6 million polymorphisms across the human genome

21 January 2018

1 reference

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Simultaneous genotype calling and haplotype phasing improves genotype accuracy and reduces false-positive associations for genome-wide association studies

21 January 2018

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12 December 2020

ssSNPTarget: genome-wide splice-site Single Nucleotide Polymorphism database

1 reference

12 December 2020

Next generation sequencing has lower sequence coverage and poorer SNP-detection capability in the regulatory regions

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12 December 2020

SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data

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12 December 2020

Identifiers

DOI

10.1038/NCOMMS2256

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Dimensions Publication ID

25 June 2017

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1044891566

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