(Q30653367)

3 October 2017

PUMA: a unified framework for penalized multiple regression analysis of GWAS data (English)

1 reference

genome-wide association study

3 October 2017

0 references

1 reference

Gabriel E Hoffman

1

1 reference

3 October 2017

Benjamin A Logsdon

series ordinal

2

1 reference

3 October 2017

Jason G Mezey

series ordinal

3

1 reference

3 October 2017

27 June 2013

1 reference

PLOS Computational Biology

3 October 2017

1 reference

3 October 2017

9

1 reference

3 October 2017

6

1 reference

3 October 2017

e1003101

1 reference

Creative Commons Attribution 4.0 International

3 October 2017

start time

27 June 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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SparseNet: Coordinate Descent With Nonconvex Penalties

20 June 2018

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Strong rules for discarding predictors in lasso-type problems

20 June 2018

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An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations.

20 June 2018

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A novel variational Bayes multiple locus Z-statistic for genome-wide association studies with Bayesian model averaging

20 June 2018

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Combined analysis of genome-wide association studies for Crohn disease and psoriasis identifies seven shared susceptibility loci

20 June 2018

1 reference

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Mouse obesity network reconstruction with a variational Bayes algorithm to employ aggressive false positive control

20 June 2018

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Zinc in specialized secretory tissues: roles in the pancreas, prostate, and mammary gland

20 June 2018

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Five years of GWAS discovery

20 June 2018

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In-silico human genomics with GeneCards

20 June 2018

1 reference

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The Pfam protein families database

20 June 2018

1 reference

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KEGG for integration and interpretation of large-scale molecular data sets

20 June 2018

1 reference

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Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk

20 June 2018

1 reference

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Pathway-driven gene stability selection of two rheumatoid arthritis GWAS identifies and validates new susceptibility genes in receptor mediated signalling pathways

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Genome partitioning of genetic variation for complex traits using common SNPs

20 June 2018

1 reference

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Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47

20 June 2018

1 reference

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Genome-wide association studies: results from the first few years and potential implications for clinical medicine

20 June 2018

1 reference

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Common variants near ATM are associated with glycemic response to metformin in type 2 diabetes

20 June 2018

1 reference

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GCTA: a tool for genome-wide complex trait analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

The Bayesian lasso for genome-wide association studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Progress and promise of genome-wide association studies for human complex trait genetics

20 June 2018

1 reference

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Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Analysing biological pathways in genome-wide association studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

A variable selection method for genome-wide association studies.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Hundreds of variants clustered in genomic loci and biological pathways affect human height

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Association screening of common and rare genetic variants by penalized regression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Regularization Parameter Selections via Generalized Information Criterion

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Penalized methods for bi-level variable selection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Common SNPs explain a large proportion of the heritability for human height

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Estimation of effect size distribution from genome-wide association studies and implications for future discoveries

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Genome-wide meta-analyses identify multiple loci associated with smoking behavior

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Multiple common variants for celiac disease influencing immune gene expression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

A variational Bayes algorithm for fast and accurate multiple locus genome-wide association analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Prioritizing GWAS results: A review of statistical methods and recommendations for their application

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Bioinformatics challenges for genome-wide association studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Elastic-net regularization approaches for genome-wide association studies of rheumatoid arthritis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Finding the missing heritability of complex diseases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

A genomewide association study points to multiple loci that predict antidepressant drug treatment outcome in depression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Discussion of "Sure Independence Screening for Ultra-High Dimensional Feature Space

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Extra-adrenal glucocorticoid synthesis in the intestinal epithelium: more than a drop in the ocean?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Mammalian zinc transporters: nutritional and physiologic regulation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Capturing the spectrum of interaction effects in genetic association studies by simulated evaporative cooling network analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Genome-wide association analysis by lasso penalized logistic regression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Personal genomes: The case of the missing heritability

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Genome-wide association study of rheumatoid arthritis in the Spanish population: KLF12 as a risk locus for rheumatoid arthritis susceptibility

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Simultaneous analysis of all SNPs in genome-wide and re-sequencing association studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Evaluating the effects of imputation on the power, coverage, and cost efficiency of genome-wide SNP platforms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Variable selection for large p small n regression models with incomplete data: mapping QTL with epistases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Semaphorins and their receptors in immune cell interactions.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Pathway-based approaches for analysis of genomewide association studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

PLINK: a tool set for whole-genome association and population-based linkage analyses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

LRH-1-mediated glucocorticoid synthesis in enterocytes protects against inflammatory bowel disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Replicating genotype-phenotype associations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Relaxin family peptide receptors--former orphans reunite with their parent ligands to activate multiple signalling pathways

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Ubiquitin: tool and target for intracellular NF-kappaB inhibitors.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Principal components analysis corrects for stratification in genome-wide association studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Signaling interplay in Ras superfamily function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Ankyrin repeat and SOCS box 3 (ASB3) mediates ubiquitination and degradation of tumor necrosis factor receptor II

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

c-Jun phosphorylation by the human vaccinia-related kinase 1 (VRK1) and its cooperation with the N-terminal kinase of c-Jun (JNK)

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

The role of apoptosis in rheumatoid arthritis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Power of multifactor dimensionality reduction for detecting gene-gene interactions in the presence of genotyping error, missing data, phenocopy, and genetic heterogeneity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

CCR4-bearing T cells participate in autoimmune diabetes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Multi-Ethnic Study of Atherosclerosis: objectives and design

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

On the shoulders of giants: p63, p73 and the rise of p53.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

Genomic control for association studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3694815

SNP selection in genome-wide and candidate gene studies via penalized logistic regression

20 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003101

A navigator for human genome epidemiology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003101

FaST linear mixed models for genome-wide association studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003101

Estimating the Dimension of a Model

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003101

A new look at the statistical model identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003101

Stability selection for genome-wide association

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003101

Bayesian multivariate logistic regression

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003101

ETS-family genes in pancreatic development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003101

Using Penalised Logistic Regression to Fine Map HLA Variants for Rheumatoid Arthritis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003101

Statistics for High-Dimensional Data

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003101

21 January 2018

Least angle regression

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003101

Extended Bayesian information criteria for model selection with large model spaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003101

A Tutorial on MM Algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003101

STAT3 locus in inflammatory bowel disease and multiple sclerosis susceptibility

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23825936

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifying interacting SNPs using Monte Carlo logic regression

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23825936

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Robust Regression: Asymptotics, Conjectures and Monte Carlo

1 reference

19 June 2022

https://opencitations.net/index/coci/api/v1/citations/10.1214/AOS/1176342503

Identifiers

DOI

10.1371/JOURNAL.PCBI.1003101

1 reference

journals/ploscb/HoffmanLM13

3 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

3 October 2017

PubMed publication ID

23825936

1 reference