(Q30683743)

English

Inference of sigma factor controlled networks by using numerical modeling applied to microarray time series data of the germinating prokaryote

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Inference of sigma factor controlled networks by using numerical modeling applied to microarray time series data of the germinating prokaryote (English)

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

author name string

Eva Strakova

1

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Alice Zikova

2

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Jiri Vohradsky

3

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

language of work or name

0 references

publication date

23 October 2013

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

number of pages

16

1 reference

based on heuristic

inferred from page(s)

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

42

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

2

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

748-763

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

copyright license

Creative Commons Attribution 3.0 Unported

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

How to infer gene networks from expression profiles, revisited

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Conservation of thiol-oxidative stress responses regulated by SigR orthologues in actinomycetes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Stochastic simulation for the inference of transcriptional control network of yeast cyclins genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Genome-wide transcription factor binding: beyond direct target regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Genes essential for morphological development and antibiotic production in Streptomyces coelicolor are targets of BldD during vegetative growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

The anti-anti-sigma factor BldG is involved in activation of the stress response sigma factor σ(H) in Streptomyces coelicolor A3(2)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Measurement variation determines the gene network topology reconstructed from experimental data: a case study of the yeast cyclin network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Model-based method for transcription factor target identification with limited data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

The dynamic architecture of the metabolic switch in Streptomyces coelicolor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Global signatures of protein and mRNA expression levels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Involvement of SigT and RstA in the differentiation of Streptomyces coelicolor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Reciprocal regulation between SigK and differentiation programs in Streptomyces coelicolor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Inference of active transcriptional networks by integration of gene expression kinetics modeling and multisource data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Development and application of versatile high density microarrays for genome-wide analysis of Streptomyces coelicolor: characterization of the HspR regulon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Small non-coding RNAs in Streptomyces coelicolor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Biocomputational prediction of small non-coding RNAs in Streptomyces

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Mycothiol regulates and is regulated by a thiol-specific antisigma factor RsrA and sigma(R) in Streptomyces coelicolor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Nonlinear differential equation model for quantification of transcriptional regulation applied to microarray data of Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Inference of gene regulatory networks and compound mode of action from time course gene expression profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

SsgA-like proteins determine the fate of peptidoglycan during sporulation of Streptomyces coelicolor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

From dormant to germinating spores of Streptomyces coelicolor A3(2): new perspectives from the crp null mutant

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Regulation of sigmaB by an anti- and an anti-anti-sigma factor in Streptomyces coelicolor in response to osmotic stress.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Activation and expression of proteins during synchronous germination of aerial spores of Streptomyces granaticolor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Differential and cross-transcriptional control of duplicated genes encoding alternative sigma factors in Streptomyces ambofaciens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

A soluble protein is immobile in dormant spores of Bacillus subtilis but is mobile in germinated spores: implications for spore dormancy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

A signal transduction system in Streptomyces coelicolor that activates the expression of a putative cell wall glycan operon in response to vancomycin and other cell wall-specific antibiotics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

sigma(BldN), an extracytoplasmic function RNA polymerase sigma factor required for aerial mycelium formation in Streptomyces coelicolor A3(2).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

RsrA, an anti-sigma factor regulated by redox change

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Evidence that the extracytoplasmic function sigma factor sigmaE is required for normal cell wall structure in Streptomyces coelicolor A3(2).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

sigmaR, an RNA polymerase sigma factor that modulates expression of the thioredoxin system in response to oxidative stress in Streptomyces coelicolor A3(2).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

The developmental fate of S. coelicolor hyphae depends upon a gene product homologous with the motility sigma factor of B. subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Construction and characterization of Streptomyces coelicolor A3(2) mutants that are multiply deficient in the nonessential hrd-encoded RNA polymerase sigma factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3902916

20 June 2018

Expression of proteins and protein kinase activity during germination of aerial spores of Streptomyces granaticolor.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT917

21 January 2018

Systems insight into the spore germination of Streptomyces coelicolor.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT917

21 January 2018

Chapter 4. Analyzing the regulation of antibiotic production in streptomycetes

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT917

21 January 2018

SigB, an RNA polymerase sigma factor required for osmoprotection and proper differentiation of Streptomyces coelicolor.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT917

21 January 2018

A new RNA polymerase sigma factor, sigma F, is required for the late stages of morphological differentiation in Streptomyces spp.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT917

21 January 2018

Defining the disulphide stress response in Streptomyces coelicolor A3(2): identification of the sigmaR regulon.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT917

21 January 2018

The sigmaR regulon of Streptomyces coelicolor A32 reveals a key role in protein quality control during disulphide stress

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT917

21 January 2018

Neural network model of gene expression.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT917

21 January 2018

A master regulator sigmaB governs osmotic and oxidative response as well as differentiation via a network of sigma factors in Streptomyces coelicolor

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT917

21 January 2018

Negative feedback regulation of dnaK, clpB and lon expression by the DnaK chaperone machine in Streptomyces coelicolor, identified by transcriptome and in vivo DnaK-depletion analysis.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT917

21 January 2018

Specialized osmotic stress response systems involve multiple SigB-like sigma factors in Streptomyces coelicolor

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT917

21 January 2018

Stress-response sigma factor σ Η is essential for morphological differentiation of Streptomyces coelicolor A3(2)

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT917

21 January 2018

The identity of the transcription +1 position is crucial for changes in gene expression in response to amino acid starvation in Bacillus subtilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/24157841

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of sigmaB-dependent promoters using consensus-directed search of Streptomyces coelicolor genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/24157841

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A novel compartment, the 'subapical stem' of the aerial hyphae, is the location of a sigN-dependent, developmentally distinct transcription in Streptomyces coelicolor

1 reference

https://pubmed.ncbi.nlm.nih.gov/24157841

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

At least three different RNA polymerase holoenzymes direct transcription of the agarase gene (dagA) of Streptomyces coelicolor A3(2)

1 reference

https://pubmed.ncbi.nlm.nih.gov/24157841

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKT917

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q30683743&oldid=1973994286"