(Q30699650)

18 October 2017

SomatiCA: identifying, characterizing and quantifying somatic copy number aberrations from cancer genome sequencing data (English)

1 reference

18 October 2017

whole genome sequencing

1 reference

based on heuristic

inferred from title

Cancer genome sequencing

1 reference

Mengjie Chen

1

1 reference

18 October 2017

Murat Gunel

series ordinal

2

1 reference

18 October 2017

Hongyu Zhao

series ordinal

3

1 reference

18 October 2017

language of work or name

English

0 references

publication date

12 November 2013

1 reference

18 October 2017

1 reference

18 October 2017

8

1 reference

18 October 2017

11

1 reference

18 October 2017

e78143

1 reference

Creative Commons Attribution 4.0 International

18 October 2017

start time

12 November 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

PurBayes: estimating tumor cellularity and subclonality in next-generation sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Robust Detection and Identification of Sparse Segments in Ultra-High Dimensional Data Analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Statistical challenges associated with detecting copy number variations with next-generation sequencing.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

PurityEst: estimating purity of human tumor samples using next-generation sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Absolute quantification of somatic DNA alterations in human cancer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

De novo assembly and genotyping of variants using colored de Bruijn graphs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Detection of structural variants and indels within exome data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next-generation sequence data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Genomic profiles of glioma

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Genome structural variation discovery and genotyping

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

ReadDepth: a parallel R package for detecting copy number alterations from short sequencing reads

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Efficient change point detection for genomic sequences of continuous measurements.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

CNAseg--a novel framework for identification of copy number changes in cancer from second-generation sequencing data.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Allele-specific copy number analysis of tumors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Personalized copy number and segmental duplication maps using next-generation sequencing.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Sensitive and accurate detection of copy number variants using read depth of coverage

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

The Sequence Alignment/Map format and SAMtools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

High-resolution mapping of copy-number alterations with massively parallel sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Adjustment of genomic waves in signal intensities from whole-genome SNP genotyping platforms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Assessing the significance of chromosomal aberrations in cancer: methodology and application to glioma

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Systematic prediction and validation of breakpoints associated with copy-number variants in the human genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

Circular binary segmentation for the analysis of array-based DNA copy number data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827077

20 June 2018

Least angle regression

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0078143

10.1371/JOURNAL.PONE.0078143

21 January 2018

Identifiers

DOI

1 reference

release_hkah4l6uzjestbtg4sisky4p4i

18 October 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/hkah4l6uzjestbtg4sisky4p4i

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

18 October 2017

PubMed publication ID

24265680

1 reference