(Q30777285)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24627790%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

title

MethylExtract: High-Quality methylation maps and SNV calling from whole genome bisulfite sequencing data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24627790%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

main subject

whole genome sequencing

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24627790%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

José L. Oliver

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24627790%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Michael Hackenberg

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24627790%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

author name string

Antonio Rueda

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24627790%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

publication date

15 October 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24627790%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24627790%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

volume

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24627790%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

page(s)

217

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24627790%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 3.0 Unported

10 March 2020

copyright license

start time

21 February 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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20 June 2018

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20 June 2018

1 reference

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Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data

20 June 2018

1 reference

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20 June 2018

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Functions of DNA methylation: islands, start sites, gene bodies and beyond

20 June 2018

1 reference

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BRAT-BW: efficient and accurate mapping of bisulfite-treated reads

20 June 2018

1 reference

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20 June 2018

1 reference

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20 June 2018

1 reference

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20 June 2018

1 reference

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MethylCoder: software pipeline for bisulfite-treated sequences

20 June 2018

1 reference

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The variant call format and VCFtools

20 June 2018

1 reference

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Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

20 June 2018

1 reference

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BS Seeker: precise mapping for bisulfite sequencing

20 June 2018

1 reference

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Dynamic changes in the human methylome during differentiation

20 June 2018

1 reference

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Principles and challenges of genomewide DNA methylation analysis

20 June 2018

1 reference

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Human DNA methylomes at base resolution show widespread epigenomic differences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

The Sequence Alignment/Map format and SAMtools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

Finding the fifth base: genome-wide sequencing of cytosine methylation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

Genome-scale DNA methylation maps of pluripotent and differentiated cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

The UCSC Genome Browser Database: 2008 update

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

The MethDB DAS server: adding an epigenetic information layer to the human genome.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

Feline foamy virus-mediated marker gene transfer: identification of essential genetic elements and influence of truncated and chimeric proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

Analysis of repetitive element DNA methylation by MethyLight

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

The evolution of pandemic clones of methicillin-resistant Staphylococcus aureus: identification of two ancestral genetic backgrounds and the associated mec elements.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

dbSNP: the NCBI database of genetic variation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

Base-calling of automated sequencer traces using phred. II. Error probabilities

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

Role for DNA methylation in genomic imprinting

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

Role of DNA methylation in the regulation of transcription

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

Identification of genetic elements that autonomously determine DNA methylation states.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

Sequence context at human single nucleotide polymorphisms: overrepresentation of CpG dinucleotide at polymorphic sites and suppression of variation in CpG islands

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

Evaluation of gene structure prediction programs.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3938178

Chromosomal Instability and Tumors Promoted by DNA Hypomethylation

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24627790

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Putting the DNA back into DNA methylation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24627790

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.12688/F1000RESEARCH.2-217.V2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24627790%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24627790%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

PubMed publication ID

24627790

1 reference