(Q30824888)

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CLImAT: accurate detection of copy number alteration and loss of heterozygosity in impure and aneuploid tumor samples using whole-genome sequencing data

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scholarly article

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Europe PubMed Central

PMC publication ID

13 October 2017

CLImAT: accurate detection of copy number alteration and loss of heterozygosity in impure and aneuploid tumor samples using whole-genome sequencing data (English)

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

whole genome sequencing

1 reference

based on heuristic

inferred from title

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based on heuristic

inferred from title

author name string

Zhenhua Yu

1

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Yuanning Liu

2

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Yi Shen

3

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Minghui Wang

4

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Ao Li

5

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

language of work or name

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publication date

19 May 2014

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

30

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

18

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

2576-2583

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

copyright license

Creative Commons Attribution-NonCommercial 3.0 Unported

14 November 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

0 references

Virmid: accurate detection of somatic mutations with sample impurity inference

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Patchwork: allele-specific copy number analysis of whole-genome sequenced tumor tissue.

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Comparative studies of copy number variation detection methods for next-generation sequencing technologies

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Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

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Absolute quantification of somatic DNA alterations in human cancer

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The clonal and mutational evolution spectrum of primary triple-negative breast cancers

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Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data

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Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion

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Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next-generation sequence data

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Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV

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The telomerase inhibitor PinX1 is a major haploinsufficient tumor suppressor essential for chromosome stability in mice

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21 June 2018

Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization

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21 June 2018

Differential expression analysis for sequence count data

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21 June 2018

Allele-specific copy number analysis of tumors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4155249

21 June 2018

Signatures of mutation and selection in the cancer genome

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21 June 2018

High-risk neuroblastoma tumors with 11q-deletion display a poor prognostic, chromosome instability phenotype with later onset

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21 June 2018

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors

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21 June 2018

Complex landscapes of somatic rearrangement in human breast cancer genomes

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21 June 2018

Sequencing technologies - the next generation

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21 June 2018

Sensitive and accurate detection of copy number variants using read depth of coverage

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21 June 2018

The Sequence Alignment/Map format and SAMtools

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21 June 2018

Fast and accurate short read alignment with Burrows-Wheeler transform

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The cancer genome

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

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Next-generation DNA sequencing methods

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Next-generation sequencing transforms today's biology

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High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping

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12 December 2020

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10.1093/BIOINFORMATICS/BTU346

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

DBLP publication ID

journals/bioinformatics/YuLSWL14

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

ResearchGate publication ID

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