(Q30833997)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24976900%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

title

Induced Polarization Influences the Fundamental Forces in DNA Base Flipping (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24976900%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24976900%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

Alex MacKerell

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24976900%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

author name string

Alexey Savelyev

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24976900%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

publication date

28 May 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24976900%20AND%20SRC:MED&resulttype=core&format=json

Journal of Physical Chemistry Letters

21 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24976900%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24976900%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

issue

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24976900%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

page(s)

2077-2083

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24976900%20AND%20SRC:MED&resulttype=core&format=json

All-atom polarizable force field for DNA based on the classical Drude oscillator model

21 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4064933

Impact of 2'-hydroxyl sampling on the conformational properties of RNA: update of the CHARMM all-atom additive force field for RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4064933

Active DNA demethylation: many roads lead to Rome.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4064933

CHARMM: the biomolecular simulation program

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4064933

Canonical dynamics: Equilibrium phase-space distributions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4064933

In vitro correction of G.T mispairs to G.C pairs in nuclear extracts from human cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4064933

Base Flipping in a GCGC Containing DNA Dodecamer: A Comparative Study of the Performance of the Nucleic Acid Force Fields, CHARMM, AMBER, and BMS.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4064933

Molecular Dynamics Simulations of Nucleic Acids. From Tetranucleotides to the Ribosome

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4064933

Optimization of the CHARMM additive force field for DNA: Improved treatment of the BI/BII conformational equilibrium.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4064933

The catalytic power of uracil DNA glycosylase in the opening of thymine base pairs

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4064933

NMR imino proton exchange experiments on duplex DNA primarily monitor the opening of purine bases.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4064933

Free energy and structural pathways of base flipping in a DNA GCGC containing sequence.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4064933

High base pair opening rates in tracts of GC base pairs

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24976900

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Atomic Level Anisotropy in the Electrostatic Modeling of Lone Pairs for a Polarizable Force Field Based on the Classical Drude Oscillator

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24976900

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/JZ5009517

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24976900%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24976900%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

PubMed publication ID

24976900

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24976900%20AND%20SRC:MED&resulttype=core&format=json