(Q30841284)

14 October 2017

SUGAR: graphical user interface-based data refiner for high-throughput DNA sequencing (English)

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14 October 2017

graphical user interface

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Yukuto Sato

1

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14 October 2017

Kaname Kojima

2

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14 October 2017

Naoki Nariai

3

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14 October 2017

Yumi Yamaguchi-Kabata

4

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14 October 2017

Yosuke Kawai

5

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14 October 2017

Mamoru Takahashi

6

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14 October 2017

Takahiro Mimori

7

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14 October 2017

Masao Nagasaki

8

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14 October 2017

language of work or name

English

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publication date

8 August 2014

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14 October 2017

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14 October 2017

15

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14 October 2017

664

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https://scigraph.springernature.com/pub.10.1186/1471-2164-15-664

14 October 2017

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cites work

QPLOT: a quality assessment tool for next generation sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4133631

HTQC: a fast quality control toolkit for Illumina sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4133631

Fast gapped-read alignment with Bowtie 2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4133631

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4133631

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4133631

The Sequence Alignment/Map format and SAMtools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4133631

Fast and accurate short read alignment with Burrows-Wheeler transform

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4133631

TileQC: a system for tile-based quality control of Solexa data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4133631

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4133631

21 June 2018

Identifiers

DOI

10.1186/1471-2164-15-664

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Dimensions Publication ID

14 October 2017

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9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-15-664

1 reference

14 October 2017

1 reference