(Q30874026)

9 January 2018

title

Assessing copy number alterations in targeted, amplicon-based next-generation sequencing data (English)

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9 January 2018

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2

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author name string

Catherine Grasso

1

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9 January 2018

Katherine Rhodes

3

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9 January 2018

Michael Quist

4

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9 January 2018

Tanaya L Neff

5

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9 January 2018

Stephen Moore

6

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9 January 2018

Scott A Tomlins

7

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9 January 2018

Erica Reinig

8

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9 January 2018

Carol Beadling

9

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9 January 2018

Mark Andersen

10

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9 January 2018

Christopher L Corless

11

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9 January 2018

publication date

7 November 2014

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9 January 2018

The Journal of Molecular Diagnostics

published in

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9 January 2018

volume

17

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9 January 2018

issue

1

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9 January 2018

page(s)

53-63

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9 January 2018

Computational methods for detecting copy number variations in cancer genome using next generation sequencing: principles and challenges

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1 reference

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Detecting somatic genetic alterations in tumor specimens by exon capture and massively parallel sequencing.

21 June 2018

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Validation and implementation of targeted capture and sequencing for the detection of actionable mutation, copy number variation, and gene rearrangement in clinical cancer specimens

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707205

Molecular diagnostic profiling of lung cancer specimens with a semiconductor-based massive parallel sequencing approach: feasibility, costs, and performance compared with conventional sequencing

21 June 2018

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SNP array technology: an array of hope in breast cancer research

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707205

Clinical validation of a next-generation sequencing screen for mutational hotspots in 46 cancer-related genes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707205

Combining highly multiplexed PCR with semiconductor-based sequencing for rapid cancer genotyping

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707205

The mutational landscape of lethal castration-resistant prostate cancer

21 June 2018

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High-throughput detection of actionable genomic alterations in clinical tumor samples by targeted, massively parallel sequencing

21 June 2018

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Summarizing and correcting the GC content bias in high-throughput sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707205

Detection of somatic copy number alterations in cancer using targeted exome capture sequencing

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707205

Targeted high throughput sequencing in clinical cancer settings: formaldehyde fixed-paraffin embedded (FFPE) tumor tissues, input amount and tumor heterogeneity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707205

Targeted polymerase chain reaction-based enrichment and next generation sequencing for diagnostic testing of congenital disorders of glycosylation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707205

High-resolution mapping of copy-number alterations with massively parallel sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707205

Integrated detection and population-genetic analysis of SNPs and copy number variation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707205

Segmental duplications and copy-number variation in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707205

High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707205

Validation of a next-generation sequencing assay for clinical molecular oncology.

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707205

Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707205

The estimation of tumor cell percentage for molecular testing by pathologists is not accurate

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707205

Accurate detection of copy number changes in DNA extracted from formalin-fixed, paraffin-embedded melanoma tissue using duplex ratio tests

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25468433

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.JMOLDX.2014.09.008

1 reference

9 January 2018

PMCID

5707205

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9 January 2018

PubMed ID

25468433

1 reference

9 January 2018