(Q30882115)

27 June 2017

In-depth evaluation of software tools for data-independent acquisition based label-free quantification (English)

1 reference

27 June 2017

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25545627%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Pedro Navarro

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25545627%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Stefan Tenzer

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25545627%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

author name string

Olaf Jahn

4

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25545627%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Ute Distler

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25545627%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

publication date

24 December 2014

1 reference

27 June 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25545627%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

volume

15

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25545627%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

issue

18

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25545627%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

page(s)

3140-3151

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25545627%20AND%20SRC:MED&resulttype=core&format=json

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

12 June 2020

cites work

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Mass spectrometry-based proteomics and network biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Mass-spectrometry-based draft of the human proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

The use of selected reaction monitoring in quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Drift time-specific collision energies enable deep-coverage data-independent acquisition proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

General statistical framework for quantitative proteomics by stable isotope labeling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Less label, more free: approaches in label-free quantitative mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Absolute quantification of the glycolytic pathway in yeast: deployment of a complete QconCAT approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Global quantification of mammalian gene expression control

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

RIBAR and xRIBAR: Methods for reproducible relative MS/MS-based label-free protein quantification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Tools for label-free peptide quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Exploring skyline for both MS(E) -based label-free proteomics and HRMS quantitation of small molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Improving qualitative and quantitative performance for MS(E)-based label-free proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Current challenges in software solutions for mass spectrometry-based quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

OpenMS - an open-source software framework for mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Data processing methods and quality control strategies for label-free LC-MS protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Universal sample preparation method for proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Effects of traveling wave ion mobility separation on data independent acquisition in proteomics studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Qualitative and quantitative characterization of plasma proteins when incorporating traveling wave ion mobility into a liquid chromatography-mass spectrometry workflow for biomarker discovery: use of product ion quantitation as an alternative data a

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Benchmarking stable isotope labeling based quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Computational and statistical analysis of protein mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

Empirical Bayesian random censoring threshold model improves detection of differentially abundant proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

The importance of the digest: Proteolysis and absolute quantification in proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400396

21 January 2018

Identifiers

DOI

10.1002/PMIC.201400396

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25545627%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

1 reference