(Q30931915)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15146298%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

title

A molecular dynamics simulation study of polyamine- and sodium-DNA. Interplay between polyamine binding and DNA structure (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15146298%20AND%20SRC:MED&resulttype=core&format=json

molecular dynamics simulation

28 December 2019

main subject

0 references

author

Alexander P Lyubartsev

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15146298%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Aatto Laaksonen

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15146298%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

author name string

Nikolay Korolev

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15146298%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Lars Nordenskiöld

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15146298%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

publication date

14 May 2004

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15146298%20AND%20SRC:MED&resulttype=core&format=json

European Biophysics Journal

28 December 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15146298%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

volume

33

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15146298%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15146298%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

page(s)

671-682

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15146298%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1007/s00249-004-0410-7

28 December 2019

exact match

0 references

cites work

Crystal structure of the nucleosome core particle at 2.8 A resolution

1 reference

12 December 2020

A molecular dynamics simulation study of oriented DNA with polyamine and sodium counterions: diffusion and averaged binding of water and cations.

1 reference

12 December 2020

The origin of the A to B transition in DNA fibers and films

1 reference

12 December 2020

Molecular dynamics simulations of DNA in solutions with different counter-ions.

1 reference

12 December 2020

Structure of a B-DNA dodecamer. III. Geometry of hydration

1 reference

12 December 2020

Influence of the dynamic positions of cations on the structure of the DNA minor groove: sequence-dependent effects

1 reference

12 December 2020

Electrostatic mechanisms of DNA deformation

1 reference

12 December 2020

1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium

1 reference

12 December 2020

DNA binding within the nucleosome core

1 reference

12 December 2020

DNA-cation interactions: quo vadis?

1 reference

12 December 2020

On the competition between water, sodium ions, and spermine in binding to DNA: a molecular dynamics computer simulation study

1 reference

12 December 2020

Z-DNA crystallography .

1 reference

12 December 2020

DNA structure: cations in charge?

1 reference

12 December 2020

Polyamine-nucleic acid interactions and the effects on structure in oriented DNA fibers

1 reference

12 December 2020

Molecular dynamics simulations of the d(CCAACGTTGG)(2) decamer: influence of the crystal environment.

1 reference

12 December 2020

Polyamines in cell growth and cell death: molecular mechanisms and therapeutic applications

1 reference

12 December 2020

Molecular dynamics simulation study of oriented polyamine- and Na-DNA: sequence specific interactions and effects on DNA structure

1 reference

12 December 2020

Localisation and dynamics of sodium counterions around DNA in solution from molecular dynamics simulation

1 reference

12 December 2020

Measuring the geometry of DNA grooves.

1 reference

12 December 2020

Mechanisms of DNA bending

1 reference

12 December 2020

Crystallization of DNA

1 reference

12 December 2020

Molecular-dynamics study of atomic motions in water

1 reference

12 December 2020

Spermine: an "invisible" component in the crystals of B-DNA. A grand canonical Monte Carlo and molecular dynamics simulation study

1 reference

12 December 2020

Locating monovalent cations in the grooves of B-DNA

1 reference

12 December 2020

Polyamines: mysterious modulators of cellular functions

1 reference

12 December 2020

Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations

1 reference

12 December 2020

Conformational transitions of the phosphodiester backbone in native DNA: two-dimensional magic-angle-spinning 31P-NMR of DNA fibers

1 reference

12 December 2020

DNA structure: what's in charge?

1 reference

12 December 2020

Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending

1 reference

12 December 2020

Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G

1 reference

12 December 2020

Bending of DNA by asymmetric charge neutralization: all-atom energy simulations

1 reference

12 December 2020

An estimate of the extent of folding of nucleosomal DNA by laterally asymmetric neutralization of phosphate groups

1 reference

12 December 2020

10.1007/S00249-004-0410-7

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15146298%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

1 reference