(Q30936072)

15 November 2017

ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data (English)

1 reference

15 November 2017

0 references

5

1 reference

15 November 2017

Chuan Jiang

1

1 reference

15 November 2017

Chao Chen

series ordinal

2

1 reference

15 November 2017

Ziyue Huang

series ordinal

3

1 reference

15 November 2017

Renyi Liu

series ordinal

4

1 reference

15 November 2017

5 March 2015

1 reference

15 November 2017

1 reference

15 November 2017

16

1 reference

15 November 2017

72

1 reference

Creative Commons Attribution 4.0 International

15 November 2017

start time

5 March 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

massive parallel sequencing

1 reference

https://scigraph.springernature.com/pub.10.1186/s12859-015-0507-2

inferred from title

exact match

0 references

cites work

TE-Locate: A Tool to Locate and Group Transposable Element Occurrences Using Paired-End Next-Generation Sequencing Data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

An improved genome release (version Mt4.0) for the model legume Medicago truncatula.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

TEMP: a computational method for analyzing transposable element polymorphism in populations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

Global reprogramming of transcription and metabolism in Medicago truncatula during progressive drought and after rewatering

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

Transposon Insertion Finder (TIF): a novel program for detection of de novo transpositions of transposable elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

STENOFOLIA recruits TOPLESS to repress ASYMMETRIC LEAVES2 at the leaf margin and promote leaf blade outgrowth in Medicago truncatula

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

Regulation of compound leaf development by PHANTASTICA in Medicago truncatula

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

A regulatory network-based approach dissects late maturation processes related to the acquisition of desiccation tolerance and longevity of Medicago truncatula seeds

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

RetroSeq: transposable element discovery from next-generation sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

MtPAR MYB transcription factor acts as an on switch for proanthocyanidin biosynthesis in Medicago truncatula.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

Sequencing of pooled DNA samples (Pool-Seq) uncovers complex dynamics of transposable element insertions in Drosophila melanogaster

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

The Medicago genome provides insight into the evolution of rhizobial symbioses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

The NemaGENETAG initiative: large scale transposon insertion gene-tagging in Caenorhabditis elegans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

Transposable elements and the epigenetic regulation of the genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

Transposon Mutagenesis of the Mouse Germline

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

Large-scale analysis of the yeast genome by transposon tagging and gene disruption

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

RNA-mediated transposition of the tobacco retrotransposon Tnt1 in Arabidopsis thaliana

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351942

A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0507-2

An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0507-2

Vapyrin, a gene essential for intracellular progression of arbuscular mycorrhizal symbiosis, is also essential for infection by rhizobia in the nodule symbiosis of Medicago truncatula.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0507-2

The C2H2 transcription factor regulator of symbiosome differentiation represses transcription of the secretory pathway gene VAMP721a and promotes symbiosome development in Medicago truncatula.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0507-2

Loss of abaxial leaf epicuticular wax in Medicago truncatula irg1/palm1 mutants results in reduced spore differentiation of anthracnose and nonhost rust pathogens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0507-2

Efficient transposition of the Tnt1 tobacco retrotransposon in the model legume Medicago truncatula.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0507-2

An efficient reverse genetics platform in the model legume Medicago truncatula

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0507-2

pIRS: Profile-based Illumina pair-end reads simulator

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0507-2

Tnt1 retrotransposon mutagenesis: a tool for soybean functional genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0507-2

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0507-2

Large-scale insertional mutagenesis using the Tnt1 retrotransposon in the model legume Medicago truncatula

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25887332

12 December 2020

inferred from PubMed ID database lookup

Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed filling

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25887332

12 December 2020

inferred from PubMed ID database lookup

Insertional mutagenesis using Tnt1 retrotransposon in potato

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25887332

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/S12859-015-0507-2

1 reference

journals/bmcbi/JiangCHLV15

15 November 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

15 November 2017

1 reference