(Q31082563)

20 September 2017

OM-FBA: Integrate Transcriptomics Data with Flux Balance Analysis to Decipher the Cell Metabolism (English)

1 reference

20 September 2017

0 references

1 reference

Weihua Guo

1

1 reference

20 September 2017

Xueyang Feng

series ordinal

2

1 reference

20 September 2017

language of work or name

English

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publication date

21 April 2016

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20 September 2017

1 reference

20 September 2017

11

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20 September 2017

4

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20 September 2017

e0154188

1 reference

Creative Commons Attribution 4.0 International

20 September 2017

start time

21 April 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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21 June 2018

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21 June 2018

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Methods for integration of transcriptomic data in genome-scale metabolic models

21 June 2018

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High-throughput proteomics

21 June 2018

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What mRNA Abundances Can Tell us about Metabolism

21 June 2018

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Mass-spectrometry-based draft of the human proteome

21 June 2018

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Refining metabolic models and accounting for regulatory effects

21 June 2018

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Recent advances in the reconstruction of metabolic models and integration of omics data

21 June 2018

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High-throughput data pipelines for metabolic flux analysis in plants

21 June 2018

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Analysis of omics data with genome-scale models of metabolism

21 June 2018

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NCBI GEO: archive for functional genomics data sets--update

21 June 2018

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Software applications for flux balance analysis

21 June 2018

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A comparative transcriptomic, fluxomic and metabolomic analysis of the response of Saccharomyces cerevisiae to increases in NADPH oxidation

21 June 2018

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Metabolic engineering of Saccharomyces cerevisiae: a key cell factory platform for future biorefineries

21 June 2018

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Integrating flux balance analysis into kinetic models to decipher the dynamic metabolism of Shewanella oneidensis MR-1.

21 June 2018

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Systems biology of yeast: enabling technology for development of cell factories for production of advanced biofuels

21 June 2018

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NCBI GEO: archive for functional genomics data sets--10 years on

21 June 2018

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The European Nucleotide Archive

21 June 2018

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Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis.

21 June 2018

1 reference

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The application of flux balance analysis in systems biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4839607

What is flux balance analysis?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4839607

Transcriptional regulation of respiration in yeast metabolizing differently repressive carbon substrates

21 June 2018

1 reference

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Mass-spectrometry-based metabolomics: limitations and recommendations for future progress with particular focus on nutrition research

21 June 2018

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Sequencing technologies - the next generation

21 June 2018

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Integrating multiple 'omics' analysis for microbial biology: application and methodologies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4839607

Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production

21 June 2018

1 reference

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Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4839607

Connecting extracellular metabolomic measurements to intracellular flux states in yeast

21 June 2018

1 reference

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RNA-Seq: a revolutionary tool for transcriptomics

21 June 2018

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NCBI GEO: archive for high-throughput functional genomic data

21 June 2018

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A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory

21 June 2018

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Applications of next-generation sequencing technologies in functional genomics

21 June 2018

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Context-specific metabolic networks are consistent with experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4839607

Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata

21 June 2018

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Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli

21 June 2018

1 reference

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Fluxomics: mass spectrometry versus quantitative imaging

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4839607

Transcriptional response of steady-state yeast cultures to transient perturbations in carbon source.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4839607

Characterization of the metabolic shift between oxidative and fermentative growth in Saccharomyces cerevisiae by comparative 13C flux analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4839607

Noise in gene expression: origins, consequences, and control

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4839607

Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4839607

Control of stochasticity in eukaryotic gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4839607

Noise minimization in eukaryotic gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4839607

Noise in eukaryotic gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4839607

Metabolomics – the link between genotypes and phenotypes

21 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4839607

21 June 2018

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0154188

The European Bioinformatics Institute (EBI) databases

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4839607

Mass spectrometry in high-throughput proteomics: ready for the big time.

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0154188

Phenotypic characterization of glucose repression mutants of Saccharomyces cerevisiae using experiments with 13C-labelled glucose

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0154188

NCBI GEO standards and services for microarray data.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0154188

iMAT: an integrative metabolic analysis tool

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27100883

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An accurate mass tag strategy for quantitative and high-throughput proteome measurements

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27100883

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0154188

1 reference

20 September 2017

0 references

1 reference

20 September 2017

PubMed publication ID

27100883

1 reference