(Q31094215)

19 August 2017

Origin of the neighboring residue effect on peptide backbone conformation (English)

1 reference

19 August 2017

Franc Avbelj

1

1 reference

19 August 2017

Robert L Baldwin

series ordinal

2

1 reference

19 August 2017

language of work or name

English

0 references

publication date

14 July 2004

1 reference

Proceedings of the National Academy of Sciences of the United States of America

19 August 2017

1 reference

19 August 2017

101

1 reference

19 August 2017

30

1 reference

19 August 2017

10967-10972

1 reference

Polyproline II helix conformation in a proline-rich environment: a theoretical study

19 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=503727

Boltzmann-type distribution of side-chain conformation in proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=503727

Role of backbone solvation and electrostatics in generating preferred peptide backbone conformations: Distributions of phi

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=503727

In search of the energetic role of peptide hydrogen bonds

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=503727

Is polyproline II a major backbone conformation in unfolded proteins?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=503727

A simple model for polyproline II structure in unfolded states of alanine-based peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=503727

Role of backbone solvation in determining thermodynamic beta propensities of the amino acids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=503727

Energetics of the interaction between water and the helical peptide group and its role in determining helix propensities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=503727

Contribution of hydration to protein folding thermodynamics. I. The enthalpy of hydration

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=503727

Primary structure effects on peptide group hydrogen exchange

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=503727

Comparison between the phi distribution of the amino acids in the protein database and NMR data indicates that amino acids have various phi propensities in the random coil conformation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=503727

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=503727

Hydrogen exchange and structural dynamics of proteins and nucleic acids

21 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=503727

21 June 2018

https://pubmed.ncbi.nlm.nih.gov/15254296

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Interaction of the peptide bond with solvent water: a vapor phase analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=503727

Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scales.

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0404050101

Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0404050101

Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0404050101

Thermodynamic beta-sheet propensities measured using a zinc-finger host peptide.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0404050101

Relationships between amino acid sequence and backbone torsion angle preferences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0404050101

Role of solvent in determining conformational preferences of alanine dipeptide in water.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0404050101

Comparison of a QM/MM force field and molecular mechanics force fields in simulations of alanine and glycine "dipeptides" (Ace-Ala-Nme and Ace-Gly-Nme) in water in relation to the problem of modeling the unfolded peptide backbone in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0404050101

Improved treatment of the protein backbone in empirical force fields.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0404050101

Contact Electron‐Spin Coupling of Nuclear Magnetic Moments

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0404050101

NMR analysis of main-chain conformational preferences in an unfolded fibronectin-binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0404050101

Polyproline II helix is the preferred conformation for unfolded polyalanine in water

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=503727

Hydrogen bond strength and beta-sheet propensities: the role of a side chain blocking effect

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15254296

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Role of electrostatic screening in determining protein main chain conformational preferences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15254296

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0404050101

1 reference

19 August 2017

0 references

1 reference

19 August 2017

PubMed publication ID

15254296

1 reference