(Q31095530)

English

Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

11 November 2017

Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory (English)

1 reference

Europe PubMed Central

11 November 2017

Abdallah Sayyed Ahmad

1

1 reference

Europe PubMed Central

11 November 2017

author name string

Kagan Tuncay

2

1 reference

Europe PubMed Central

11 November 2017

Peter J Ortoleva

3

1 reference

Europe PubMed Central

11 November 2017

language of work or name

1 reference

based on heuristic

inferred from title

publication date

23 January 2007

1 reference

Europe PubMed Central

11 November 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

11 November 2017

8

1 reference

Europe PubMed Central

11 November 2017

20

1 reference

Europe PubMed Central

11 November 2017

https://scigraph.springernature.com/pub.10.1186/1471-2105-8-20

0 references

Prediction of functional modules based on comparative genome analysis and Gene Ontology application

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Oscillations in NF-kappaB signaling control the dynamics of gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

In control: systematic assessment of microarray performance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

DNA microarrays: tools for the 21st Century

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

How do site-specific DNA-binding proteins find their targets?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Evolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Network component analysis: reconstruction of regulatory signals in biological systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Tissue microarrays in drug discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Normalization of cDNA microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

A Software Package for cDNA Microarray Data Normalization and Assessing Confidence Intervals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Quantitative cell biology with the Virtual Cell

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

New normalization methods for cDNA microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Inferring genetic networks and identifying compound mode of action via expression profiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Bayesian automatic relevance determination algorithms for classifying gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

A cluster validity framework for genome expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Characterization of variability in large-scale gene expression data: implications for study design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Dynamic modeling of gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Using Bayesian networks to analyze expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Fundamental patterns underlying gene expression profiles: simplicity from complexity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

DNA chips: promising toys have become powerful tools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Exploring the new world of the genome with DNA microarrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

EcoCyc: Encyclopedia of Escherichia coli genes and metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Exploring the metabolic and genetic control of gene expression on a genomic scale

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

21 June 2018

Simulating cellular dynamics through a coupled transcription, translation, metabolic model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

25 November 2018

The Karyote® Physico-Chemical Genomic, Proteomic, Metabolic Cell Modeling System

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

25 November 2018

Disparity between changes in mRNA abundance and enzyme activity in Corynebacterium glutamicum: implications for DNA microarray analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

25 November 2018

Linear modes of gene expression determined by independent component analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

25 November 2018

Inferring subnetworks from perturbed expression profiles.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1790715

25 November 2018

Effect of transcription inhibitors on the iron-dependent degradation of transferrin receptor mRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/17244365

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA microarrays in drug discovery and development

1 reference

https://pubmed.ncbi.nlm.nih.gov/17244365

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-8-20

1 reference

Europe PubMed Central

11 November 2017

DBLP publication ID

journals/bmcbi/Sayyed-AhmadTO07

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

1 reference

Europe PubMed Central

11 November 2017

1 reference

Europe PubMed Central

11 November 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q31095530&oldid=1641144731"