(Q31104442)

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Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: comparison with high-throughput experimental data

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: comparison with high-throughput experimental data (English)

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Escherichia coli

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author name string

Sailu Yellaboina

1

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Kshama Goyal

2

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Shekhar C Mande

3

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

publication date

5 March 2007

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Genome Research

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

17

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

4

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

527-535

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

1 reference

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21 June 2018

Choosing negative examples for the prediction of protein-protein interactions

1 reference

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21 June 2018

Emergent properties of reduced-genome Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

Large-scale identification of protein-protein interaction of Escherichia coli K-12

1 reference

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21 June 2018

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

1 reference

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The Plasmodium protein network diverges from those of other eukaryotes

1 reference

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21 June 2018

Scale-free networks in cell biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

A human protein-protein interaction network: a resource for annotating the proteome

1 reference

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21 June 2018

VisANT: data-integrating visual framework for biological networks and modules

1 reference

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21 June 2018

Nebulon: a system for the inference of functional relationships of gene products from the rearrangement of predicted operons

1 reference

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21 June 2018

Interaction network containing conserved and essential protein complexes in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

EcoCyc: a comprehensive database resource for Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

wEMBOSS: a web interface for EMBOSS

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

Protein interaction networks from yeast to human

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

Genomic analysis of essentiality within protein networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

Network biology: understanding the cell's functional organization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

A map of the interactome network of the metazoan C. elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

Cytoscape: a software environment for integrated models of biomolecular interaction networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

Computational identification of operons in microbial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

Comparative assessment of large-scale data sets of protein-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

Evolutionary rate in the protein interaction network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

Lethality and centrality in protein networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

Prediction of operons in microbial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

The protein-protein interaction map of Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

Physiological functions of thioredoxin and thioredoxin reductase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

Operons in Escherichia coli: genomic analyses and predictions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

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Emergence of Scaling in Random Networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

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Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

21 June 2018

The use of gene clusters to infer functional coupling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

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A family of stability determinants in pathogenic bacteria

1 reference

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Conservation of gene order: a fingerprint of proteins that physically interact

1 reference

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1 reference

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21 June 2018

Refined phylogenetic profiles method for predicting protein-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

25 November 2018

Functional topology in a network of protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

25 November 2018

Scale-free networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1832100

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Rapid induction and reversal of a bacteriostatic condition by controlled expression of toxins and antitoxins.

1 reference

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Protein dispensability and rate of evolution

1 reference

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25 November 2018

Annotation of bacterial genomes using improved phylogenomic profiles

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339371

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Scale-free networks with an exponent less than two

1 reference

https://pubmed.ncbi.nlm.nih.gov/17339371

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GR.5900607

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 October 2017

ResearchGate publication ID

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