(Q31152573)

English

CSI-Tree: a regression tree approach for modeling binding properties of DNA-binding molecules based on cognate site identification (CSI) data

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

9 September 2017

CSI-Tree: a regression tree approach for modeling binding properties of DNA-binding molecules based on cognate site identification (CSI) data (English)

1 reference

Europe PubMed Central

PMC publication ID

9 September 2017

author name string

Sündüz Keleş

1

1 reference

Europe PubMed Central

PMC publication ID

9 September 2017

Christopher L Warren

2

1 reference

Europe PubMed Central

PMC publication ID

9 September 2017

Clayton D Carlson

3

1 reference

Europe PubMed Central

PMC publication ID

9 September 2017

Aseem Z Ansari

4

1 reference

Europe PubMed Central

PMC publication ID

9 September 2017

language of work or name

0 references

publication date

13 April 2008

1 reference

Europe PubMed Central

PMC publication ID

9 September 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

9 September 2017

36

1 reference

Europe PubMed Central

PMC publication ID

9 September 2017

10

1 reference

Europe PubMed Central

PMC publication ID

9 September 2017

3171-3184

1 reference

Europe PubMed Central

PMC publication ID

9 September 2017

Quantitative microarray profiling of DNA-binding molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425502

21 June 2018

Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

1 reference

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21 June 2018

Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.

1 reference

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21 June 2018

Defining the sequence-recognition profile of DNA-binding molecules

1 reference

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21 June 2018

Molecular flexibility in ab initio drug docking to DNA: binding-site and binding-mode transitions in all-atom Monte Carlo simulations

1 reference

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21 June 2018

Identification of transcription factor binding sites with variable-order Bayesian networks

1 reference

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21 June 2018

Transcriptional regulatory code of a eukaryotic genome

1 reference

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Molecular dynamics simulations of DNA curvature and flexibility: helix phasing and premelting

1 reference

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21 June 2018

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

1 reference

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Combining phylogenetic data with co-regulated genes to identify regulatory motifs

1 reference

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21 June 2018

Recognition of the DNA minor groove by pyrrole-imidazole polyamides

1 reference

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21 June 2018

Sequencing and comparison of yeast species to identify genes and regulatory elements

1 reference

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21 June 2018

Crystal structures of nucleosome core particles in complex with minor groove DNA-binding ligands

1 reference

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21 June 2018

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

1 reference

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21 June 2018

A statistical model for investigating binding probabilities of DNA nucleotide sequences using microarrays

1 reference

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21 June 2018

Modular design of artificial transcription factors

1 reference

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21 June 2018

Additivity in protein-DNA interactions: how good an approximation is it?

1 reference

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21 June 2018

Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425502

21 June 2018

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425502

21 June 2018

Intrinsic bending and deformability at the T-A step of CCTTTAAAGG: a comparative analysis of T-A and A-T steps within A-tracts

1 reference

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21 June 2018

Exploring the DNA-binding specificities of zinc fingers with DNA microarrays

1 reference

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21 June 2018

The TRANSFAC system on gene expression regulation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425502

21 June 2018

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425502

21 June 2018

The three-dimensional structure of the vnd/NK-2 homeodomain-DNA complex by NMR spectroscopy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425502

21 June 2018

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425502

21 June 2018

Interactions of the vnd/NK-2 homeodomain with DNA by nuclear magnetic resonance spectroscopy: basis of binding specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425502

21 June 2018

Effects of the A.T/T.A degeneracy of pyrrole--imidazole polyamide recognition in the minor groove of DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2425502

21 June 2018

Recognition of DNA by designed ligands at subnanomolar concentrations

1 reference

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Identification of novel DNA binding targets and regulatory domains of a murine tinman homeodomain factor, nkx-2.5.

1 reference

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Computer methods to locate signals in nucleic acid sequences

1 reference

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Supervised detection of conserved motifs in DNA sequences with cosmo

1 reference

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31 October 2018

Asymptotic optimality of likelihood-based cross-validation

1 reference

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Structural and energetic origins of sequence-specific DNA bending: Monte Carlo simulations of papillomavirus E2-DNA binding sites.

1 reference

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31 October 2018

Bending in the right direction.

1 reference

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31 October 2018

Finding short DNA motifs using permuted Markov models.

1 reference

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31 October 2018

Enhanced position weight matrices using mixture models

1 reference

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Modeling within-motif dependence for transcription factor binding site predictions

1 reference

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Site-directed mutations in the vnd/NK-2 homeodomain. Basis of variations in structure and sequence-specific DNA binding.

1 reference

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31 October 2018

Identifiers

10.1093/NAR/GKN057

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30 July 2022

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https://api.fatcat.wiki/v0/release/avyrzis35zhnxpbta42ljhkpy4

30 July 2022

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PMC publication ID

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https://api.fatcat.wiki/v0/release/avyrzis35zhnxpbta42ljhkpy4

30 July 2022

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PubMed publication ID

1 reference

https://api.fatcat.wiki/v0/release/avyrzis35zhnxpbta42ljhkpy4

30 July 2022

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ResearchGate publication ID

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