(Q33241516)

24 July 2017

title

Flexible promoter architecture requirements for coactivator recruitment (English)

1 reference

24 July 2017

5

1 reference

24 July 2017

Derek Y Chiang

1

1 reference

24 July 2017

David A Nix

series ordinal

2

1 reference

24 July 2017

Ryan K Shultzaberger

series ordinal

3

1 reference

24 July 2017

Audrey P Gasch

series ordinal

4

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24 July 2017

publication date

28 April 2006

1 reference

24 July 2017

published in

BMC Molecular Biology

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24 July 2017

volume

7

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24 July 2017

page(s)

16

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Logic functions of the genomic cis-regulatory code

24 July 2017

cites work

1 reference

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21 June 2018

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21 June 2018

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Combinatorial control of gene expression.

21 June 2018

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21 June 2018

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Cbf1p is required for chromatin remodeling at promoter-proximal CACGTG motifs in yeast.

21 June 2018

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A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli

21 June 2018

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Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information.

21 June 2018

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Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts

21 June 2018

1 reference

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Regulated displacement of TBP from the PHO8 promoter in vivo requires Cbf1 and the Isw1 chromatin remodeling complex

21 June 2018

1 reference

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Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

21 June 2018

1 reference

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Sequencing and comparison of yeast species to identify genes and regulatory elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Eukaryotic transcriptional regulatory complexes: cooperativity from near and afar

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Mcm1p-induced DNA bending regulates the formation of ternary transcription factor complexes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Transcriptional regulatory networks and the yeast cell cycle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Generation of a synthetic mammalian promoter library by modification of sequences spacing transcription factor binding sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Identifying regulatory networks by combinatorial analysis of promoter elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Transcriptional coactivator complexes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Genomic expression programs in the response of yeast cells to environmental changes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Preferential accessibility of the yeast his3 promoter is determined by a general property of the DNA sequence, not by specific elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Zero background yeast reporter plasmids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Discovering regulatory elements in non-coding sequences by analysis of spaced dyads

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Dissecting the regulatory circuitry of a eukaryotic genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Multiple transcriptional activation complexes tether the yeast activator Met4 to DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

The enhanceosome and transcriptional synergy.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Metabolism of sulfur amino acids in Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Assembly of a bZIP-bHLH transcription activation complex: formation of the yeast Cbf1-Met4-Met28 complex is regulated through Met28 stimulation of Cbf1 DNA binding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

A heteromeric complex containing the centromere binding factor 1 and two basic leucine zipper factors, Met4 and Met28, mediates the transcription activation of yeast sulfur metabolism.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Activation mechanism of the multifunctional transcription factor repressor-activator protein 1 (Rap1p)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Cpf1 protein induced bending of yeast centromere DNA element I.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Cooperative binding of heat shock transcription factor to the Hsp70 promoter in vivo and in vitro.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Sequence logos: a new way to display consensus sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Predicting gene expression from sequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Occurrence probability of structured motifs in random sequences.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Sulfur sparing in the yeast proteome in response to sulfur demand.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Functional promoter modules can be detected by formal models independent of overall nucleotide sequence similarity

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Position and density effects on repression by stationary and mobile DNA-binding proteins

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1488866

Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes

31 October 2018

1 reference

12 December 2020

Use of imidazoleglycerolphosphate dehydratase (His3) as a biological reporter in yeast

1 reference

12 December 2020

Identifying target sites for cooperatively binding factors

1 reference

12 December 2020

Altered DNA Recognition and Bending by Insertions in the alpha2 Tail of the Yeast a1/alpha2 Homeodomai n Heterodimer

1 reference

12 December 2020

Determining the requirements for cooperative DNA binding by Swi5p and Pho2p (Grf10p/Bas2p) at the HO promoter

1 reference

12 December 2020

Metabolism of sulfur amino acids in Saccharomyces cerevisiae

1 reference

COCI

https://opencitations.net/index/api/v1/citations/10.1128/MMBR.61.4.503-532.1997

30 June 2024

Identifiers

DOI

10.1186/1471-2199-7-16

1 reference

24 July 2017

1 reference

24 July 2017

1 reference