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PepDist: a new framework for protein-peptide binding prediction based on learning peptide distance functions
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
1810314
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16723006%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
title
PepDist: a new framework for protein-peptide binding prediction based on learning peptide distance functions
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
1810314
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16723006%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
main subject
protein function prediction
0 references
author
Tomer Hertz
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
1810314
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16723006%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
Chen Yanover
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
1810314
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16723006%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
author name string
Chen Yanover
series ordinal
2
1 reference
stated in
Europe PubMed Central
PubMed publication ID
16723006
retrieved
24 July 2017
publication date
20 March 2006
1 reference
stated in
Europe PubMed Central
PMC publication ID
1810314
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16723006%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
published in
BMC Bioinformatics
1 reference
stated in
Europe PubMed Central
PMC publication ID
1810314
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16723006%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
volume
7 Suppl 1
1 reference
stated in
Europe PubMed Central
PMC publication ID
1810314
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16723006%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
page(s)
S3
1 reference
stated in
Europe PubMed Central
PMC publication ID
1810314
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16723006%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
copyright license
Creative Commons Attribution 2.0 Generic
start time
1 March 2006
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
Quantification of PDZ domain specificity, prediction of ligand affinity and rational design of super-binding peptides
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810314
retrieved
21 June 2018
Towards in silico prediction of immunogenic epitopes
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stated in
PubMed Central
reference URL
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retrieved
21 June 2018
Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810314
retrieved
21 June 2018
MHCBN: a comprehensive database of MHC binding and non-binding peptides
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810314
retrieved
21 June 2018
Prediction of MHC class I binding peptides, using SVMHC
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810314
retrieved
21 June 2018
Methods for prediction of peptide binding to MHC molecules: a comparative study.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810314
retrieved
21 June 2018
PDZ domains: structural modules for protein complex assembly
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810314
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21 June 2018
Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810314
retrieved
21 June 2018
Poor correspondence between predicted and experimental binding of peptides to class I MHC molecules
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810314
retrieved
21 June 2018
Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810314
retrieved
21 June 2018
Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810314
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21 June 2018
MHCPEP, a database of MHC-binding peptides: update 1997.
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21 June 2018
MHC ligands and peptide motifs: first listing
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21 June 2018
The three-dimensional structure of peptide-MHC complexes
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PubMed Central
reference URL
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21 June 2018
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
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PubMed Central
reference URL
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21 June 2018
Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810314
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31 October 2018
Tools of the trade in vaccine design.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810314
retrieved
31 October 2018
Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810314
retrieved
31 October 2018
Two complementary methods for predicting peptides binding major histocompatibility complex molecules.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810314
retrieved
31 October 2018
Identifiers
DOI
10.1186/1471-2105-7-S1-S3
1 reference
stated in
Europe PubMed Central
PMC publication ID
1810314
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16723006%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
DBLP publication ID
journals/bmcbi/HertzY06
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
Dimensions Publication ID
1007576669
0 references
Fatcat ID
release_ropuby2crvby5dtte7fz2srnge
1 reference
stated in
Fatcat
reference URL
https://api.fatcat.wiki/v0/release/ropuby2crvby5dtte7fz2srnge
retrieved
24 November 2022
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mapped directly with Wikidata item
PMC publication ID
1810314
1 reference
stated in
Europe PubMed Central
PMC publication ID
1810314
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16723006%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
PubMed publication ID
16723006
1 reference
stated in
Europe PubMed Central
PMC publication ID
1810314
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16723006%20AND%20SRC:MED&resulttype=core&format=json
retrieved
28 January 2020
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