(Q33258603)

24 July 2017

title

Comparative assessment of performance and genome dependence among phylogenetic profiling methods (English)

1 reference

24 July 2017

1 reference

Evan S Snitkin

1

1 reference

24 July 2017

Adam M Gustafson

2

1 reference

24 July 2017

Joseph Mellor

3

1 reference

24 July 2017

Jie Wu

4

1 reference

24 July 2017

Charles DeLisi

5

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24 July 2017

publication date

27 September 2006

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24 July 2017

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24 July 2017

volume

7

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24 July 2017

page(s)

420

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Predicting functional gene links from phylogenetic-statistical analyses of whole genomes

24 July 2017

cites work

1 reference

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21 June 2018

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Comparative genomics identifies a flagellar and basal body proteome that includes the BBS5 human disease gene

21 June 2018

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The evolutionary dynamics of eukaryotic gene order

21 June 2018

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21 June 2018

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21 June 2018

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The Pfam protein families database

21 June 2018

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The COG database: an updated version includes eukaryotes

21 June 2018

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Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages

21 June 2018

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The genome sequence of the filamentous fungus Neurospora crassa

21 June 2018

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Essential genes are more evolutionarily conserved than are nonessential genes in bacteria

21 June 2018

1 reference

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Predictome: a database of putative functional links between proteins

21 June 2018

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Genes linked by fusion events are generally of the same functional category: a systematic analysis of 30 microbial genomes

21 June 2018

1 reference

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Localizing proteins in the cell from their phylogenetic profiles.

21 June 2018

1 reference

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21 June 2018

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Protein interaction maps for complete genomes based on gene fusion events

21 June 2018

1 reference

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Whole genome-based phylogenetic analysis of free-living microorganisms

21 June 2018

1 reference

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The genomic tree as revealed from whole proteome comparisons

21 June 2018

1 reference

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Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592128

Genome phylogeny based on gene content

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592128

Conservation of gene order: a fingerprint of proteins that physically interact

21 June 2018

1 reference

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Basic local alignment search tool

21 June 2018

1 reference

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Identification and categorization of horizontally transferred genes in prokaryotic genomes.

21 June 2018

1 reference

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Refined phylogenetic profiles method for predicting protein-protein interactions

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592128

Detecting putative orthologs.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592128

Predicting functional linkages from gene fusions with confidence

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592128

Identification of functional links between genes using phylogenetic profiles.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592128

Integrative approach for computationally inferring protein domain interactions

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592128

An insight into domain combinations

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592128

Protein dispensability and rate of evolution

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592128

Microbial genescapes: phyletic and functional patterns of ORF distribution among prokaryotes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592128

Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1592128

Annotation of bacterial genomes using improved phylogenomic profiles

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17005048

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifying functional links between genes using conserved chromosomal proximity

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17005048

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A domain interaction map based on phylogenetic profiling

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17005048

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-7-420

1 reference

journals/bmcbi/SnitkinGMWD06

24 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

24 July 2017

1 reference