(Q33316586)

25 July 2017

title

Molecular adaptation and expression evolution following duplication of genes for organellar ribosomal protein S13 in rosids (English)

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25 July 2017

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Shao-Lun Liu

1

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25 July 2017

Keith Adams

series ordinal

2

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25 July 2017

publication date

26 January 2008

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25 July 2017

published in

BMC Evolutionary Biology

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25 July 2017

volume

8

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25 July 2017

page(s)

25

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The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

25 July 2017

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21 June 2018

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21 June 2018

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Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements

21 June 2018

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Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids

21 June 2018

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Analyses of expressed sequence tags from apple.

21 June 2018

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Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana

21 June 2018

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RNA editing in plant organelles: machinery, physiological function and evolution

21 June 2018

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Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network

21 June 2018

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Expression divergence between duplicate genes

21 June 2018

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21 June 2018

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A gene expression map of Arabidopsis thaliana development

21 June 2018

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Polyploidy and genome evolution in plants

21 June 2018

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The evolutionary dynamics of plant duplicate genes

21 June 2018

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Bayes empirical bayes inference of amino acid sites under positive selection

21 June 2018

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Rapid evolution of expression and regulatory divergences after yeast gene duplication

21 June 2018

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Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

21 June 2018

1 reference

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The early stages of duplicate gene evolution.

21 June 2018

1 reference

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Evolutionary dynamics of duplicated genes in plants.

21 June 2018

1 reference

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Evolution of mitochondrial gene content: gene loss and transfer to the nucleus

21 June 2018

1 reference

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Asymmetric sequence divergence of duplicate genes

21 June 2018

1 reference

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SWISS-MODEL: An automated protein homology-modeling server

21 June 2018

1 reference

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Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

21 June 2018

1 reference

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Rapid divergence in expression between duplicate genes inferred from microarray data

21 June 2018

1 reference

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Punctuated evolution of mitochondrial gene content: high and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution

21 June 2018

1 reference

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Selection and gene duplication: a view from the genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Extensive feature detection of N-terminal protein sorting signals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Crystal structure of the ribosome at 5.5 A resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Codon-substitution models for heterogeneous selection pressure at amino acid sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

The probability of duplicate gene preservation by subfunctionalization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Intracellular gene transfer in action: dual transcription and multiple silencings of nuclear and mitochondrial cox2 genes in legumes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Preservation of duplicate genes by complementary, degenerative mutations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

PAML: a program package for phylogenetic analysis by maximum likelihood

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Computational method to predict mitochondrially imported proteins and their targeting sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

The monosaccharide transporter gene family in Arabidopsis and rice: a history of duplications, adaptive evolution, and functional divergence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Consistent patterns of rate asymmetry and gene loss indicate widespread neofunctionalization of yeast genes after whole-genome duplication

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Functional diversification of B MADS-box homeotic regulators of flower development: Adaptive evolution in protein-protein interaction domains after major gene duplication events.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Point mutations with positive selection were a major force during the evolution of a receptor-kinase resistance gene family of rice

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Comparative analysis of bacterial-origin genes for plant mitochondrial ribosomal proteins.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Transfer of RPS14 and RPL5 from the mitochondrion to the nucleus in grasses.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Crystal structure of the 30 s ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 s RNA

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Characterization of the nuclear gene encoding chloroplast ribosomal protein S13 from Arabidopsis thaliana.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Divergence in Expression between Duplicated Genes in Arabidopsis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

The gene encoding Arabidopsis thaliana mitochondrial ribosomal protein S13 is a recent duplication of the gene encoding plastid S13

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2258280

Evolutionary transfers of mitochondrial genes to the nucleus in the Populus lineage and coexpression of nuclear and mitochondrial Sdh4 genes

31 October 2018

1 reference

12 December 2020

Likelihood-ratio tests for positive selection of human and mouse duplicate genes reveal nonconservative and anomalous properties of widely used methods

1 reference

12 December 2020

Pervasive adaptive evolution in mammalian fertilization proteins

1 reference

12 December 2020

Expression of mitochondrial genes in the germinating conidia of Neurospora crassa

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2148-8-25

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Dimensions Publication ID

25 July 2017

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25 July 2017

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