(Q33323688)

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Improved group-specific PCR primers for denaturing gradient gel electrophoresis analysis of the genetic diversity of complex microbial communities

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scholarly article

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Europe PubMed Central

PubMed publication ID

25 July 2017

Improved group-specific PCR primers for denaturing gradient gel electrophoresis analysis of the genetic diversity of complex microbial communities (English)

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Europe PubMed Central

PubMed publication ID

25 July 2017

electrophoresis

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genetic diversity

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author name string

Martin Mühling

1

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Europe PubMed Central

PubMed publication ID

25 July 2017

John Woolven-Allen

2

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Europe PubMed Central

PubMed publication ID

25 July 2017

J Colin Murrell

3

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Europe PubMed Central

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25 July 2017

Ian Joint

4

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Europe PubMed Central

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25 July 2017

publication date

13 March 2008

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25 July 2017

The ISME Journal

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Europe PubMed Central

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25 July 2017

2

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Europe PubMed Central

PubMed publication ID

25 July 2017

4

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Europe PubMed Central

PubMed publication ID

25 July 2017

379-392

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Europe PubMed Central

PubMed publication ID

25 July 2017

https://scigraph.springernature.com/pub.10.1038/ismej.2007.97

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At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies

1 reference

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PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database

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Review and re-analysis of domain-specific 16S primers

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Phylum- and class-specific PCR primers for general microbial community analysis

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Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice.

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Use of the ammonia-oxidizing bacterial-specific phylogenetic probe Nso1225 as a primer for fingerprint analysis of ammonia-oxidizer communities

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Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria

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Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester

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Estimating prokaryotic diversity and its limits

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Nested PCR-denaturing gradient gel electrophoresis approach to determine the diversity of sulfate-reducing bacteria in complex microbial communities

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Community structure of ammonia-oxidizing bacteria within anoxic marine sediments

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16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the Green Non-Sulfur bacteria

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Actively growing bacteria in the inland sea of Japan, identified by combined bromodeoxyuridine immunocapture and denaturing gradient gel electrophoresis

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GC fractionation enhances microbial community diversity assessment and detection of minority populations of bacteria by denaturing gradient gel electrophoresis

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ARB: a software environment for sequence data

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Metagenomics of the deep Mediterranean, a warm bathypelagic habitat

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Fate of heterotrophic microbes in pelagic habitats: focus on populations

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Microbial diversity in the deep sea and the underexplored "rare biosphere"

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New primers for the class Actinobacteria: application to marine and terrestrial environments

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The SAR92 clade: an abundant coastal clade of culturable marine bacteria possessing proteorhodopsin

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Environmental genome shotgun sequencing of the Sargasso Sea

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Molecular analysis of enrichment cultures of marine ammonia oxidisers

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The Atlantic Meridional Transect (AMT) Programme: A contextual view 1995–2005

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Dual staining of natural bacterioplankton with 4',6-diamidino-2-phenylindole and fluorescent oligonucleotide probes targeting kingdom-level 16S rRNA sequences

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Application of a novel rpoC1-RFLP approach reveals that marine Prochlorococcus populations in the Atlantic gyres are composed of greater microdiversity than previously described

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Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA.

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Molecular analysis of enrichment cultures of marine ammonia oxidisers

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Nucleotide sequences of streptomycete 16S ribosomal DNA: towards a specific identification system for streptomycetes using PCR.

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Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

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PCR primers to amplify 16S rRNA genes from cyanobacteria

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Molecular ecology of the marine cyanobacterial genera Prochlorococcus and Synechococcus

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Quantification of Gram-negative sulphate-reducing bacteria in rice field soil by 16S rRNA gene-targeted real-time PCR

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Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales

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16S ribosomal DNA amplification for phylogenetic study

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Comparison of prokaryotic diversity at offshore oceanic locations reveals a different microbiota in the Mediterranean Sea

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Identifiers

10.1038/ISMEJ.2007.97

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

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PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

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