(Q33335983)

25 July 2017

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title

Compressing DNA sequence databases with coil (English)

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25 July 2017

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W Timothy J White

1

1 reference

25 July 2017

Michael D Hendy

series ordinal

2

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25 July 2017

publication date

20 May 2008

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25 July 2017

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25 July 2017

volume

9

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25 July 2017

page(s)

242

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Creative Commons Attribution 2.0 Generic

25 July 2017

copyright license

start time

20 May 2008

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April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426707

Application of compression-based distance measures to protein sequence classification: a methodological study.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426707

The Protein Information Resource

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426707

PatternHunter: faster and more sensitive homology search

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426707

SSAHA: a fast search method for large DNA databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426707

Clustering of highly homologous sequences to reduce the size of large protein databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426707

Compression of protein sequence databases.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426707

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426707

Rapid and sensitive protein similarity searches

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426707

DNACompress: fast and effective DNA sequence compression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426707

Tolerating some redundancy significantly speeds up clustering of large protein databases.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426707

A compression algorithm for DNA sequences.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426707

An information-based sequence distance and its application to whole mitochondrial genome phylogeny.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2426707

Biological sequence compression algorithms

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18489794

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-9-242

1 reference

25 July 2017

DBLP publication ID

journals/bmcbi/WhiteH08

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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25 July 2017

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