(Q33341061)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18536645%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

title

Image processing for electron microscopy single-particle analysis using XMIPP (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18536645%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18536645%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

Roberto Marabini

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18536645%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

author name string

Rafael Núñez-Ramírez

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18536645%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

Carlos O S Sorzano

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18536645%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

José María Carazo

4

1 reference

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8 January 2020

publication date

1 January 2008

1 reference

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8 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18536645%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

volume

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18536645%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18536645%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

page(s)

977-990

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18536645%20AND%20SRC:MED&resulttype=core&format=json

3D structure of Syk kinase determined by single-particle electron microscopy

8 January 2020

cites work

1 reference

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Modeling experimental image formation for likelihood-based classification of electron microscopy data

21 June 2018

1 reference

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Quasi-atomic model of bacteriophage t7 procapsid shell: insights into the structure and evolution of a basic fold.

21 June 2018

1 reference

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Realizing the potential of electron cryo-microscopy

21 June 2018

1 reference

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Structural model of full-length human Ku70-Ku80 heterodimer and its recognition of DNA and DNA-PKcs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Bsoft: image processing and molecular modeling for electron microscopy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

A novel method for improvement of visualization of power spectra for sorting cryo-electron micrographs and their local areas.

21 June 2018

1 reference

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SPARX, a new environment for Cryo-EM image processing

21 June 2018

1 reference

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Fast maximum-likelihood refinement of electron microscopy images

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Maximum-likelihood multi-reference refinement for electron microscopy images

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Spectral signal-to-noise ratio and resolution assessment of 3D reconstructions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

XMIPP: a new generation of an open-source image processing package for electron microscopy.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Three-dimensional electron microscopy at molecular resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Automatic particle selection: results of a comparative study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Transfer function restoration in 3D electron microscopy via iterative data refinement.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

The effect of overabundant projection directions on 3D reconstruction algorithms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

EMAN: semiautomated software for high-resolution single-particle reconstructions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

A new generation of the IMAGIC image processing system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Advances in computational image processing for microscopy.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Functional implications of quasi-equivalence in a T = 3 icosahedral animal virus established by cryo-electron microscopy and X-ray crystallography

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Harmonic analysis of electron microscope images with rotational symmetry.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli

21 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

21 June 2018

https://api.crossref.org/works/10.1038%2FNPROT.2008.62

The ATPase activity of the DNA transporter TrwB is modulated by protein TrwA: implications for a common assembly mechanism of DNA translocating motors

31 March 2020

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Automated cryoelectron microscopy of "single particles" applied to the 26S proteasome.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Loading a ring: structure of the Bacillus subtilis DnaB protein, a co-loader of the replicative helicase.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Spline-based image-to-volume registration for three-dimensional electron microscopy.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

A multiresolution approach to orientation assignment in 3D electron microscopy of single particles

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Quantitative self-organizing maps for clustering electron tomograms.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

A novel neural network technique for analysis and classification of EM single-particle images.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Mapping and fuzzy classification of macromolecular images using self-organizing neural networks.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

3D reconstruction in electron microscopy using ART with smooth spherically symmetric volume elements (blobs).

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Divergent Substrate-Binding Mechanisms Reveal an Evolutionary Specialization of Eukaryotic Prefoldin Compared to Its Archaeal Counterpart

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2778070

Xmipp: An Image Processing Package for Electron Microscopy

31 October 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2008.62

Structural basis for the PufX-mediated dimerization of bacterial photosynthetic core complexes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2008.62

Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2008.62

Quaternary Polymorphism of Replicative Helicase G40P: Structural Mapping and Domain Rearrangement

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2008.62

31 March 2020

Identifiers

DOI

10.1038/NPROT.2008.62

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18536645%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

8 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18536645%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

PubMed publication ID

18536645

1 reference