(Q33370406)

26 July 2017

1 reference

title

MetWAMer: eukaryotic translation initiation site prediction (English)

1 reference

26 July 2017

Michael E Sparks

1

1 reference

26 July 2017

Volker Brendel

series ordinal

2

1 reference

26 July 2017

publication date

18 September 2008

1 reference

26 July 2017

1 reference

26 July 2017

volume

9

1 reference

26 July 2017

page(s)

381

1 reference

Creative Commons Attribution 2.0 Generic

26 July 2017

copyright license

start time

18 September 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Functional annotation of the Arabidopsis genome using controlled vocabularies

21 June 2018

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21 June 2018

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Comparison of computational methods for identifying translation initiation sites in EST data

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Starting the protein synthesis machine: eukaryotic translation initiation.

21 June 2018

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Non-AUG translation initiation of mRNA encoding acidic ribosomal P2A protein in Candida albicans

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Improved microbial gene identification with GLIMMER

21 June 2018

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Initiation of translation in prokaryotes and eukaryotes

21 June 2018

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Assessing protein coding region integrity in cDNA sequencing projects

21 June 2018

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Microbial gene identification using interpolated Markov models

21 June 2018

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Starting at the beginning, middle, and end: translation initiation in eukaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2603428

Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information

21 June 2018

1 reference

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Interpreting cDNA sequences: some insights from studies on translation

21 June 2018

1 reference

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Use of the ‘Perceptron’ algorithm to distinguish translational initiation sites inE. coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2603428

Comparison of the consensus sequence flanking translational start sites in Drosophila and vertebrates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2603428

An analysis of 5'-noncoding sequences from 699 vertebrate messenger RNAs

21 June 2018

1 reference

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Basic local alignment search tool

21 June 2018

1 reference

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Sequence logos: a new way to display consensus sequences

21 June 2018

1 reference

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cis-acting elements involved in the alternative translation initiation process of human basic fibroblast growth factor mRNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2603428

How do eucaryotic ribosomes select initiation regions in messenger RNA?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2603428

Using native and syntenically mapped cDNA alignments to improve de novo gene finding.

21 June 2018

1 reference

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Translation initiation site prediction on a genomic scale: beauty in simplicity

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2603428

Incorporation of splice site probability models for non-canonical introns improves gene structure prediction in plants

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2603428

A class of edit kernels for SVMs to predict translation initiation sites in eukaryotic mRNAs

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2603428

DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2603428

Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2603428

Recognition of translation initiation sites of eukaryotic genes based on an EM algorithm.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2603428

Modeling sequencing errors by combining Hidden Markov models.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2603428

Prediction whether a human cDNA sequence contains initiation codon by combining statistical information and similarity with protein sequences.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2603428

Engineering support vector machine kernels that recognize translation initiation sites

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2603428

Neural network prediction of translation initiation sites in eukaryotes: perspectives for EST and genome analysis.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2603428

Using amino acid patterns to accurately predict translation initiation sites

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18801175

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Prediction of translation initiation sites on the genome of Synechocystis sp. strain PCC6803 by Hidden Markov model

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18801175

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-9-381

1 reference

26 July 2017

DBLP publication ID

journals/bmcbi/SparksB08

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

26 July 2017

1 reference